Table 1.

Differentially expressed genes grouped according to the direction and localization of their response at 5 and 7 d.p.i.

Groups at 5 d.p.i.
SYSTEMIC INDUCTION (26 GENES)				LOCALIZED INDUCTION (33 GENES)
ID	Name	ID	Name	ID	Name	ID	Name
AT1G02850	BGLU11	AT3G49210		AT1G06770	DRIP1	AT3G09940	ATMDAR3,
AT1G14880	PCR1	AT3G49620	DIN11	AT1G25390		AT3G11340
AT1G35710		AT3G53600		AT1G27020		AT3G14225	GLIP4
AT1G49050		AT4G11890		AT1G30730		AT3G22600
AT1G73805		AT4G12480	pEARLI 1	AT1G35260	MLP165	AT3G25655	IDL1
AT1G74710	EDS16, ATICS1	AT4G12500		AT1G44130		AT3G60120	BGLU27
AT2G25510		AT4G20000		AT1G51800		AT4G11890
AT2G27660		AT4G21850	MSRB9	AT1G53470	MSL4	AT4G23550	WRKY29
AT3G04720	PR4, HEL	AT4G23150	CRK7	AT1G61120	TPS04, GES	AT4G25950	VATG3
AT3G22231	PCC1	AT5G03350		AT1G69930	GSTU11	AT4G38830	CRK26
AT3G22235		AT5G13320	ATGH3.12	AT1G74010		AT5G12340
AT3G25610		AT5G40780		AT2G19500	CKX2, ATCKX2	AT5G22540
AT3G29034		AT5G44568		AT2G20805		AT5G37490
REPRESSION (16 GENES)				AT2G28110	FRA8, IRX7	AT5G38900
ID	Name	ID	Name	AT2G31990		AT5G39580
AT1G05910		AT3G28460		AT2G36810		AT5G48657
AT1G71050	HIPP20	AT3G52770	ZPR3	AT3G02240	RGF7
AT1G71695		AT4G00400	GPAT8,
AT1G73620		AT5G02770
AT2G22400		AT5G13000	gsl12
AT2G32860	BGLU33	AT5G17410
AT3G18160	PEX3-1	AT5G40640
AT3G19960	ATM1	AT5G58240	FHIT
Groups at 7 d.p.i.
SYSTEMIC INDUCTION (54 GENES)				LOCALIZED INDUCTION (52 GENES)
ID	Name	ID	Name	ID	Name	ID	Name
AT1G01680	PUB54	AT3G29130		AT1G02850	BGLU11	AT3G21710
AT1G02520	PGP11	AT3G47480		AT1G05260	RCI3, RCI3A	AT3G46616
AT1G02850	BGLU11	AT3G61280		AT1G26420		AT3G52710
AT1G14880	PCR1	AT4G01350		AT1G30720		AT3G61390
AT1G19610	LCR78, PDF1.4	AT4G12480	pEARLI 1	AT1G30730		AT4G01720	WRKY47
AT1G33960	AIG1	AT4G12490		AT1G34460	CYCB1;5, CYC3	AT4G09420
AT1G35710		AT4G12500		AT1G34670	MYB93	AT4G16563
AT1G55790		AT4G14400	ACD6	AT1G44130		AT4G18540
AT1G66280	BGLU22	AT4G16260		AT1G53830	PME2	AT4G21120	AAT1, CAT1
AT1G73805		AT4G20000		AT1G56550	RXGT1	AT4G23210	CRK13
AT1G74710	EDS16, ICS1, SID2	AT4G20110	VSR7, VSR3;1, BP80-3;1	AT1G58190	RLP9	AT4G38830	CRK26
AT1G75040	PR5, PR-5	AT4G23150	CRK7	AT1G58400		AT5G02230
AT2G14560	LURP1	AT4G39830		AT1G64583		AT5G15130	WRKY72
AT2G18660	PNP-A	AT5G01900	WRKY62	AT1G65090		AT5G18780
AT2G21900	WRKY59, ATWRKY59	AT5G10760		AT1G66920		AT5G21280
AT2G44380		AT5G11210	GLR2.5	AT1G69930	GSTU11	AT5G22570	WRKY38
AT2G44890	CYP704A1	AT5G13320	PBS3, GDG1, WIN3, GH3.12	AT1G71910		AT5G25260
AT2G45510	CYP704A2	AT5G22540		AT1G77380	AAP3	AT5G25910	RLP52
AT3G04720	PR4, HEL	AT5G24530	DMR6	AT2G19190	FRK1	AT5G37415	AGL105
AT3G09940	MDHAR, MDAR3,	AT5G37490		AT2G27180		AT5G37540
AT3G11340		AT5G37600	GLN1;1, GSR 1	AT2G28110	FRA8, IRX7	AT5G38540
AT3G18250		AT5G38550		AT2G30550		AT5G48290
AT3G21080		AT5G38900		AT2G35980	YLS9, NHL10	AT5G50200	WR3, NRT3.1
AT3G22235		AT5G39580		AT2G45220		AT5G57450	XRCC3
AT3G22600		AT5G44585		AT2G47550		AT5G59930
AT3G26210	CYP71B23	AT5G44920		AT3G09940	MDHAR MDAR3, MDAR2	AT5G61640	PMSR1, ATMSRA1
AT3G29034		AT5G46350	WRKY8
Hpa-SITE-SPECIFIC INDUCTION (56 GENES)
ID	Name	ID	Name	ID	Name	ID	Name
AT1G01150		AT1G76370		AT3G50190		AT4G37710
AT1G05880	ARI12	AT2G09840		AT3G54730		AT5G06520
AT1G13480		AT2G19500	CKX2	AT3G55150	EXO70H1	AT5G07610
AT1G15640		AT2G21550		AT3G55700		AT5G11400
AT1G17020	SRG1	AT2G30395	OFP17	AT3G60120	BGLU27	AT5G18270	ANAC087
AT1G21360	GLTP2	AT2G35770	scpl28	AT3G61827		AT5G19270
AT1G29600		AT2G38365		AT3G62640		AT5G20330	BETAG4
AT1G51915		AT2G43730		AT4G01750	RGXT2	AT5G24080
AT1G53980		AT3G01420	ALPHA-DOX1	AT4G03950		AT5G28190
AT1G60095		AT3G06260	GATL4	AT4G04775		AT5G28235
AT1G61750		AT3G14225	GLIP4	AT4G14630	GLP9	AT5G39560
AT1G63245	CLE14	AT3G15340	PPI2	AT4G15417	RTL1	AT5G42120
AT1G68630		AT3G26470		AT4G19950		AT5G61160	AACT1
AT1G69810	WRKY36	AT3G29035	ANAC059, NAC3	AT4G20470		AT5G63225
SYSTEMIC REPRESSION (31 GENES)				LOCALIZED REPRESSION (32 GENES)
ID	Name	ID	Name	ID	Name	ID	Name
AT1G10930	ATSGS1, RECQ4A	AT3G04460	PEX12, APM4	AT1G07320	RPL4	AT2G36490	DML1, ROS1
AT1G12244		AT3G04850		AT1G11720	ATSS3, SS3	AT3G05730
AT1G16350		AT3G23670	PAKRP1L, KINESIN-12B	AT1G12845		AT3G15353	MT3
AT1G21440		AT3G28460		AT1G13380		AT3G19450	ATCAD4,
AT1G48620	HON5	AT4G11990		AT1G14690	MAP65-7	AT3G45850
AT1G48650		AT4G21270	ATK1, KATAP	AT1G27385		AT3G54190
AT1G54820		AT4G22930	PYR4, DHOASE	AT1G35780		AT3G60840	MAP65-4
AT1G58060		AT4G30610	BRS1, SCPL24	AT1G48600	AtPMEAMT	AT4G37080
AT1G63630		AT4G34210	ASK11, SK11	AT1G53560		AT5G01015
AT1G66510		AT4G37110		AT1G70370	PG2	AT5G15310	ATMYB16, ATMIXTA,
AT2G21380		AT5G17220	GST26, TT19, GSTF12	AT1G71695		AT5G15740
AT2G22330	CYP79B3	AT5G17410		AT1G79200		AT5G20630	ATGER3,
AT2G26680		AT5G46390		AT1G79280	NUA, AtTPR	AT5G39790
AT2G40760		AT5G51350		AT2G26330	ER, QRP1	AT5G48600	ATCAP-C
AT2G45440	DHDPS2	AT5G64240	MC3	AT2G30540		AT5G50740
AT3G02900					AT2G32880		AT5G57130

At 5 and 7 d.p.i., transcripts were classified as either “upregulated” or “downregulated,” then split into groups according to the ratio of a Hpa-local response (measured as the log₂ fold-change between Hpa-local cells and uninfected cells at that time point) and a Hpa-distal response (the fold-change between Hpa-distal and uninfected cells). See Figure 4 for a graphical representation of their expression pattern, Table S2 for expression values, and Table S3 for GO term analysis details.