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. 2015 May 22;290(28):17190–17205. doi: 10.1074/jbc.M115.640037

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© 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

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FIGURE 5. — Phylogenetic tree of UPF0586 proteins. Protein sequences were aligned using Muscle (16), whereas the phylogentic tree was inferred with the use of phylogenetic estimation using maximum likelihood (18). Brunch support values assessed using the approximate likelihood ratio test are indicated (21). The protein sequences that were used for the analysis and corresponding GenBank^TM accession numbers are as follows: A. carolinensis (XP_003216582.1); Arabidopsis thaliana (NP_180775.2); Bombus terrestris (XP_003400717.1); Bos taurus (XP_580351.6); Ceratitis capitata (XP_004530443.1); Columba livia (XP_005499843.1); Crassostrea gigas (EKC21396.1); Cucumis sativus (XP_004149525.1); Danio rerio (XP_005171825.1); Drosophila melanogaster (NP_726779.1); G. gallus (XP_003643080.1); H. sapiens (NP_689633.1); Kluyveromyces marxianus (BAP73908.1); Maylandia zebra (XP_004544272.1); Melopsittacus undulatus (XP_005155020.1); Oreochromis niloticus (XP_005473258.1); Oryza sativa (EEE64325.1); Oryzias latipes (XP_004072743.1); Pichia kudriavzevii (KGK39127.1); Python bivittatus (XP_007433028.1); R. norvegicus (NP_001020145.1); S. cerevisiae (NP_014307.1); Sus scrofa (XP_003122012.3); Taeniopygia guttata (XP_002190574.1); Xenopus tropicalis (NP_001119994.1); Zea mays (NP_001167849.1).