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. 2015 May 22;290(28):17190–17205. doi: 10.1074/jbc.M115.640037

TABLE 3.

Proteins identified in the gel bands submitted to trypsin digestion and MS/MS analysis

Identified proteins are listed for each band according to their score calculated by ProteinLynx Global Server software (PLGS). For each protein, its molecular weight (Mr) and the sequence coverage are also indicated. Occasional peptide hits corresponding to keratins have not been included.

Gel band Protein name UniProt accession number PLGS scorea Mr Coverage
%
A Glycine-tRNA ligase G3V7G8 5061 81,740 50
Serum albumin P02770 2293 68,686 33
Anionic trypsin 1 P00762 1070 25,942 8
Calpain 1 catalytic subunit P97571 532 82,067 32
B Smyd1 D4A7U4, D4A3D2b 2786 54,948 55
Myosin light chain kinase 2 G3V731 1507 65,907 29
F 5-hydroxytryptamine receptor 2B F1LWG8 1497 95,672 29
Anionic trypsin 1 P00762 1074 25,942 8
Aspartyl aminopeptidase Q4V8H5 896 52,522 46
C UPF0586 protein C9orf41 homolog Q5BJZ6 7356 46,355 58.5
Anionic trypsin 1 P00762 575 25,942 8

a PLGS score is calculated by the Protein Lynx Global Server (version 2.4) software using a Monte Carlo algorithm to analyze all acquired mass spectral data and is a statistical measure of accuracy of assignation. A higher score implies a greater confidence of protein identity.

b Current primary accession number.