Table 1.
CRESS-DNA genomes identified in this study, the organism they were obtained from, and genome details (acronym, genome length, nonanucleotide motif, genome type, and ORFs identified).
| Genome1 | Organism | Tissue type | Genome (bp) | Genomic architecture | Nonanucleotide2 | Cap3 | Rep |
|---|---|---|---|---|---|---|---|
| P. diogenes Giant Hermit Crab aCV(I0004A) | Petrochirus diogenes | Abdomen | 1815 | Type V | TAGTATTAC | X∗ | X |
| Palaemonete sp. Common Grass Shrimp aCV (I0006H) | Palaemonete sp. | Hepatopancreas | 2257 | Type II | TAGTATTAC | X∗ | X |
| Aiptasia sp. Sea Anemone aCV (I0007C2) | Aiptasia sp. | Whole organism | 1901 | Type I | CATTATTAC | X | X |
| Aiptasia sp. Sea Anemone aCV (I0007C3) | Aiptasia sp. | Whole organism | 1942 | Type I | CATTATTAC | X | X |
| L. variegatus Variable Sea Urchin aCV (I0021) | Lytechinus variegatus | Gonads | 2167 | Type III | GACTATTAC∗ | X∗ | X |
| Didemnum sp. Sea Squirt aCV (I0026A4) | Didemnum sp. | Whole organism | 2061 | Type IV | CAGTATTAC | X | X |
| Didemnum sp. Sea Squirt aCV (I0026A7) | Didemnum sp. | Whole organism | 2143 | Type I | CAGTATTAC | X∗ | X |
| Littorina sp. Snail aCV (I0041) | Littorina sp. | Whole organism | 2237 | Type II | CAGTATTAC | X | X |
| C. ornatus Ornate Blue Crab aCV (I0054) | Callinectes ornatus | Gonads | 1241 | Type I | CAGTATTAC | X | X |
| C. sapidus Atlantic Blue Crab aCV (I0056) | Callinectes sapidus | Gonads | 1876 | Type I | CAGTATTAC | X | X |
| P. intermedius Brackish Grass Shrimp aCV (I0059) | Palaemonetes intermedius | Whole organism | 2293 | Type I | CAGTATTAC | X∗ | X |
| F. duorarum Pink Shrimp aCV (I0066) | Farfantepenaeus duorarum | Whole organism | 1799 | Type I | CAGTATTAC | X | X |
| F. duorarum Pink Shrimp aCV (I0069) | Farfantepenaeus duorarum | Whole organism | 1966 | Type I | CAGTATTAC | X∗ | X |
| Marine Snail aCV (I0084) | Marine Snail | Whole organism | 2305 | Type I | TAGTATTAC | X∗ | X |
| Hermit Crab aCV (I0085A4) | Hermit Crab | Abdomen | 2291 | Type I | TAGTATTAC | X∗ | X |
| Hermit Crab aCV (I0085A5) | Hermit Crab | Abdomen | 2291 | Type I | TAGTATTAC | X∗ | X |
| Hermit Crab aCG (I0085b) | Hermit Crab | Abdomen | 1063 | Type VII | CAGTATTAC | X | |
| Fiddler Crab aCV (I0086a) | Fiddler Crab | Gonads and claw muscle | 1635 | Type II | GATTATTAC | X | X |
| Fiddler Crab aCV (I0086b) | Fiddler Crab | Gonads and claw muscle | 1511 | Type V | AAGTATTAC | X | X |
| P. kadiakensis Mississippi Grass Shrimp aCV (I0099) | Palaemonetes kadiakensis | Whole organism | 1895 | N/A | None | X∗ | X |
| Gammarus sp. Amphipod aCV (I0153) | Gammarus sp. | Whole organism | 1999 | Type I | TAGTATTAC | X∗ | X |
| Mytilus sp. Clam aCV (I0169) | Mytilus sp. | Whole organism | 1894 | Type I | TAGTATTAC | X | X |
| Calanoida sp. Copepod aCV (I0298) | Calanoida sp. | Whole organism | 2469 | Type II | TAGTATTAC | X | X |
| A. melana Sponge aCG (I0307) | Artemia melana | Tissue segment | 1826 | Type VII | TAGTATTAC | X | |
| P. pacifica Coral aCV (I0345) | Primnoa pacifica | Polyps | 1240 | N/A | None | X∗ | X |
| P. placomus Coral aCV (I0351) | Paramuricea placomus | Polyps | 2292 | Type II | TAGTATTAC | X∗ | X |
| S. brevirostris Brown Rock Shrimp aCV (I0722) | Sicyonia brevirostris | Gonads | 1600 | Type V | TAATATTAC∗ | X | X |
1Genome names contain abbreviation aCV for associated circular virus or aCG for associated circular genome. ID within parentheses corresponds to ID used throughout the paper.
2Nonanucleotide motif sequences that were not identified within a stem-loop structure are denoted with an asterisk (∗).
3Non-Rep encoding ORFs were identified as putative capsid proteins based on BLAST results. However, many non-Rep-encoding ORFs did not exhibit any significant matches (marked with an asterisk∗).