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. Author manuscript; available in PMC: 2016 Mar 1.
Published in final edited form as: J Am Stat Assoc. 2015 Jan 22;110(510):503–514. doi: 10.1080/01621459.2014.995794

Figure 1.

Figure 1

(a) Somatic mutations (in red) that are acquired during tumor growth lead to the emergence of new subclones and haplotypes. (b) An illustration of an SNV and read mapping. The figure shows five short reads that are mapped to the indicated SNV location. The reference genotype is A. Among the five reads, two reads have a variant genotype C. So Nst = 5, nst = 2 and the observed VAF is 2=5.