Table 5. Performances of unsupervised disulfide connectivity predictors when added to supervised Machine Learning methods.
Method | Number of Bonds | ||||||||
---|---|---|---|---|---|---|---|---|---|
2 | 3 | 4 | 5 | Average | |||||
Rb | Qp | Rb | Qp | Rb | Qp | Rb | Qp | Qp | |
Random | 33 | 33 | 20 | 7 | 14 | 1 | 11 | 0.1 | 15 |
SVR | 75 | 75 | 60 | 48 | 57 | 44 | 46 | 19 | 54 |
SVR+MIp+ICOV | 76 | 76 | 63 | 55 | 68 | 51 | 59 | 32 | 59 |
skSVR | 79 | 79 | 67 | 60 | 60 | 41 | 55 | 28 | 60 |
skSVR+Sephiroth | 86 | 86 | 71 | 64 | 67 | 50 | 66 | 46 | 68 |
skSVR+PhyloCys | 82 | 82 | 68 | 59 | 69 | 59 | 68 | 51 | 67 |
skSVR+Sephiroth+PhyloCys | 87 | 87 | 69 | 61 | 74 | 62 | 70 | 49 | 69 |
Performances of different supervised Machine Learning-based methods on the PDBCYS dataset. SVR and SVR+MIp+ICOV scores are reported from [9]; Sephiroth performances have been obtained with 3 iter E-value = 10−2 HHblits MSAs and are reported from [16], PhyloCys scores are obtained with 3 iter E-value = 10−5.