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. 2015 Jul 10;10(7):e0131792. doi: 10.1371/journal.pone.0131792

Table 5. Performances of unsupervised disulfide connectivity predictors when added to supervised Machine Learning methods.

Method Number of Bonds
2 3 4 5 Average
Rb Qp Rb Qp Rb Qp Rb Qp Qp
Random 33 33 20 7 14 1 11 0.1 15
SVR 75 75 60 48 57 44 46 19 54
SVR+MIp+ICOV 76 76 63 55 68 51 59 32 59
skSVR 79 79 67 60 60 41 55 28 60
skSVR+Sephiroth 86 86 71 64 67 50 66 46 68
skSVR+PhyloCys 82 82 68 59 69 59 68 51 67
skSVR+Sephiroth+PhyloCys 87 87 69 61 74 62 70 49 69

Performances of different supervised Machine Learning-based methods on the PDBCYS dataset. SVR and SVR+MIp+ICOV scores are reported from [9]; Sephiroth performances have been obtained with 3 iter E-value = 10−2 HHblits MSAs and are reported from [16], PhyloCys scores are obtained with 3 iter E-value = 10−5.