Table 7.
Genome prevalence of the consensus sequences constructed by aligning the motifs found significant by the algorithm, and functional characterization of the corresponding genes. The second column contains the total number of genes in the yeast genome in which the consensus sequence is found at least once in the upstream region. The third column reports one of the annotation terms to which the consensus sequence is associated, and the number of genes annotated to the term among the ones containing the consensus sequence.
| Consensus sequence | Total genes | Annotated genes |
| GATGAGATAGCT | 17 | nucleolus (8) |
| AAAAATTTTC | 233 | nucleolus (37) |
| MCSCMTACAY | 78 | cytosolic ribosome (20) |
| ARACGCGTMG | 15 | DNA replication and chromosome cycle (2) |
| AAMYGCGAWCG | 6 | nucleosome (0) |
| GATGAGTCAY | 5 | amino-acid metabolism (3) |
| TGAAACA | 560 | sexual reproduction (26) |
| AGGGTGCA | 40 | siderophore transport (5) |
| CGGCGCCGAG | 5 | tricarboxylic acid cycle (3) |
| ACCCCT | 434 | alpha, alpha-trehalose phosphate synthase complex (UDP-forming) (2) |
| CCGGTGGC | 17 | 26S proteasome (6) |