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. 2015 Apr 13;43(12):e78. doi: 10.1093/nar/gkv227

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© The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 2. — Plots of gene prediction sensitivity (Sn) as functions of gene prediction specificity (1 − Sp) for TransDecoder, Prodigal and GeneMarkS-T determined on test sets of ‘complete’ reference transcripts of A. thaliana, D. melanogaster, M. musculus and S. pombe. We applied the three tools in both strand blind and strand informed (S) modes. To build the curves we generated sets of predicted genes with minimal length controlled by the mgl threshold (see text). As the mgl values increased from 90 to 480 bp (with 30 bp step) the Sn values decreased.