Table 2.

Counts of paired-end reads per library before and after quality-filtering and trimming.

Experimental Group	Tissue	No. paired-end reads before trimming	No. trimmed paired-end reads
Control	Gill	18,671,390	18,331,683
Treatment	Gill	19,599,721	19,270,123
Control	Hepatopancreas	23,838,054	23,376,636
Treatment	Hepatopancreas	25,324,586	24,842,054

Number of paired-end sequencing reads from C. sapidus before and after quality trimming and filtering