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. 2015 Jun 16;24(7):1075–1086. doi: 10.1002/pro.2689

Table 1.

ChSeqs in Homologous Proteins

Sequence pdb1 length1 pdb2 length2 Alignment lengtha Alignment fractionb (%) Annotationc Protein named
VSVLTSKVLD 4jhF 498 3rkiA 528 454 86 Functional Fusion protein of respiratory syncytial virus
MDSKLRCVFE 3ikkA 127 2mdkA 125 124 98 Unpublished hVAPB MSP domain
IKASQELV 3n4pA 279 2kn8A 68 68 24 Fragment Human cytomegalovirus terminase nuclease domain
SAEAGVDAe 1jtiA 385 1ovaD 386 383 99 Functional Serine protease inhibitor ovalbumin
AKEEAIKE 2kdmA 56 2jwsA 56 51 91 Engineer GA95 and GB95
VKYKAKLIe 1p3rA 160 2lswA 40 26 16 Fragment Phosphotyrosin binding domain (Ptb) of mouse disabled 2
EIKHSVK 2lclA 66 2ougA 162 62 38 Functional Transcription factor Rfah
RSMLLLN 2lclA 66 2ougA 162 62 38 Functional Transcription factor Rfah
LGRVVDE 3mw3A 208 2r1bA 220 168 76 Functional Cell surface adhesion molecule neurexin 1β
LDPLEVH 3lruA 160 4jkeA 222 160 72 Unpublished Human Prp8 Rnase H-like domain
QSLGTAVe 4gipD 409 1svfA 64 63 15 Functional Fusion protein of paramyxovirus
FKKIKVL 2rfeA 324 1z9iA 53 20 6 Fragment Epidermal growth factor receptor
KILVQAe 1p3hA 99 1p82A 25 24 24 Fragment Mycobacterium tuberculosis chaperonin 10
RLFQVK 3ffnA 782 1solA 20 20 3 Fragment Calcium-free human gelsolin
VADVVQe 4gipD 409 1svfA 64 63 15 Functional Fusion protein of paramyxovirus
KKVRFF 3r8sU 102 2gyaS 99 99 97 Functional 50S ribosomal protein L24
LIEYFR 3ly6A 697 2q3zA 687 683 98 Functional Cysteine proteinase
SYNIRH 3l9qA 195 3q36A 192 186 95 Functional 4Fe–4S cluster domain of human DNA primase
KAVVSL 4jhwF 498 3rkiA 528 454 86 Functional Fusion protein of respiratory syncytial virus
TVIDEL 4h6zA 190 4hkfA 191 186 97 Functional Tubulin acetyltransferase
a

Alignment length: the length of the alignments between pdb1 and pdb2.

b

Alignment fraction: the alignment length divided by the maximum of length1 and length2.

c

Annotation: categorization of conformational differences in ChSeqs, including conformational changes (i) with associated function (functional), (ii) in protein of diverse lengths (fragment), (iii) involving unpublished structures (unpublished), and (iv) in engineered proteins (engineer).

d

Protein name: the protein name summarized from the pdb entries.

e

One structure of the ChSeqs recorded in the DynDom database.

f

Both structures of the ChSeqs recorded in the DynDom database.