Table 1. Primers and PCR conditions used for P. larvae 16S-PCR identification, rep-PCR analysis and PlyPl23 cloning.
Amplicon | Sequence (5’- 3’) | Annealing (oC.s-1) | Extension (s) |
---|---|---|---|
16S rRNA | F: CTTGTGTTTCTTTCGGGAGACGCC; R: TCTTAGAGTGCCCACCTCTGCG | 55/30 | 90 |
Rep-PCR | ERIC2: AAGTAAGTGACTGGGGTGAGC; ERIC1R: ATGTAAGCTCCTGGGGATTCA | 47/45 | 120 |
PlyPl23 | Ply23F: AGAAGCCATATGATGGAAATCAGACAGATGCTAGTAGGA (NdeI); Ply23R: TACGATGGATCCTCACAGGCACCCACTCGCCAAAA (BamHI) | 53/30 | 60 |