Table 1. Different methods used for extraction of metagenomic DNA from four different soils.
Method | Homogenizing agent | Homogenizing equipment | Processing time (h) | DNA Yield(μg/g of soil) |
---|---|---|---|---|
M1 [39] | Extraction buffer | Nil | 5 | 1.29 ± 0.02 |
M2 [6] | Glass beads | Bead beater | 7 | 3.42 ± 0.04 |
M3 [6] | Nil | Sonicator | 7 | 1.47 ± 0.04 |
M4 [10] | Lysozyme | -70°C deep freezer and dryice ethanol bath | 8 | 3.38 ± 0.05 |
M5 (Fast DNA SPIN kit) | As per the manufacturer’s protocol | Bead beater | 1.5 | 3.51 ± 0.03 |
M6 (present study) | Glass Powder | Nil | 1.5 | 5.87 ± 0.04 |
DNA yield represents the Average ± SD values of four different soils.
Nil represents there is no usage of homogenizing equipment.