Skip to main content
. 2015 Jul 14;6:716. doi: 10.3389/fmicb.2015.00716

Table 2.

Oligonucleotides used in this study.

Protein purification Sequence 5′–3′
P15TV-L FRedA-F tgtatttccagggcatgaaattactagcaattgttgg
P15TV-L FRedA-R caagcttcgtcatcattatttttgagcttgttcaacacaaa
P15TV-L FRedB-F tgtatttccagggcatgaaactctttgccattgt
P15TV-L FRedB-R caagcttcgtcatcactacttacttacttcagcataa
P15TV-L LjPAS-F ttgtatttccagggcatggcagaacctaaatggtta
P15TV-L LjPAS-R caagcttcgtcatcattaatactctgaagcaccaga
FRedA pCDF BamHI-Fw cgcggatcccatgaaattactagcaattgttg
FRedA pCDF NotIRv atatcaatatgcggccgcattatttttgagcttgttcaaca
FRedB pCDF BamHI-Fw cgcggatcccatgaaactctttgccattgta
FRedB pCDF NotIRv atatcaatatgcggccgcactacttacttacttcagcat

Coexpression

FRedB pCDF NcoI-Fw gacatgccatggaactctttgccattgt
FRedB pCDF NotI-Rv atatcaatatgcggccgcactacttacttacttcagcat
FRedA pCDF NcoI-Fw gacatgccatggaattactagcaattgttg
FRedA pCDF NotI-Rv tatatgcggccgctttttgagcttgttcaacaaat
LjPAS pCDF NcoI-Fw gacatgccatggtggcagaacctaaatggtt
LjPAS pCDF NotI-Rv tatatgcggccgcatactctgaagcaccagaa

Dual hybrid

FRedA NdeI-Fw ggaattccatatgatgaaattactagcaattgttg
FRedA NotI Rv tatatgcggccgctttttgagcttgttcaacaaat
FRedB NdeI-Fw ggaattccatatgatgaaactctttgccattgta
FRedB NotI Rv tatatgcggccgccttacttacttcagcataaaaa

qRT-PCR

Alcohol/acetylaldehyde dehydrogenase-F gtggtcatactgcgggagtt
Alcohol/acetylaldehyde dehydrogenase-R acgacatgcatccattttca
Cytochrome d oxidase 1-F cactggtgagctctggttca
Cytochrome d oxidase 1-R actccgccaagagttgagaa
Cytochrome d oxidase 2-F tcgctactgatccagcacac
Cytochrome d oxidase 2-R agctaaagcgattggcaaaa
Fructose/mannose inducible IIC-F ttggtgcacaaggtgtcact
Fructose/mannose inducible IIC-R tggaagcatagcaccaacag
PAS 10 containing protein (LjPAS)-F atacaatgggcgctgttcat
PAS 10 containing protein (LjPAS)-R acgggcattttcacttcatc
Lactate dehydrogenase-F ttcaagctgctcgcgtacta
Lactate dehydrogenase-R gtaagtcgcgcttagccatc
Surface protein Rib-F aacacagccaattcacacca
Surface protein Rib-R gctggcatttcatccttgtt
FtsZ cell division protein-F agctgctgaagagagccaac
FtsZ cell division protein-R tgcaattacaggagcagcac
Glutamine synthetase type I-F tcggcgtgatattgttgaaa
Glutamine synthetase type I-R cacctacttcgtggtgagca
Mannose/fructose/sorbose family IIC-F tttacctggggattttcacg
Mannose/fructose/sorbose family IIC-R aacccatcagtcaaccaagc
MocA family oxidoreductases-F gcgagcaaaacagcctaaac
MocA family oxidoreductases-R cttcatgggcacttgcagta
Hypothetical adhesin-F taattctggtgcagctggtg

qRT-PCR Sequence 5′–3′

Hypothetical adhesin-R agcggctgcatcgttaatac
Iron–sulfur cluster protein SufB-F gctcgcggtactatgctttc
Iron–sulfur cluster protein SufB-R tccagctccagaatcttggt
Manganese transporter MntH-F agaagccctggtatcctgct
Manganese transporter MntH-R gagatggcaatgcagacaaa
Sigma factor gene rpoD-F ctggagttggttctcttccca
Sigma factor gene rpoD-R taacatgggtttgatgaaggct

Underlines indicate restriction sites.

Italics indicate infusion recombination sequences.