Table 2.

Accuracy and percentage correct for calling genotypes of sequenced animals and for imputation for 250 young animals with simulated bovine data

Sequenced population		Software	Genotype calling (1 % error rate)		Imputation from HD to sequence
Size	Coverage		Percentage correct	Correlation	Percentage correct	Correlation
250	8×	Findhap	98.7	0.981	95.0	0.926
		Beagle	99.0	0.984	97.1	0.956
500	8×	Findhap	99.1	0.988	98.1	0.974
		Beagle	99.6	0.994	99.4	0.991
250	4×	Findhap	95.8	0.939	93.1	0.897
		Beagle	95.0	0.918	78.2	0.582
250	2×	Findhap	91.3	0.879	89.2	0.837
		Beagle	79.5	0.602	63.5	0.100