Table 2.
Sample | Expected profilea | Lab 1 | Lab 2 | Lab 3 | Lab 4 | Lab 5 | Lab 6 |
---|---|---|---|---|---|---|---|
1 (M129) | 44572 | 44572 | 43562 | 44572 | 44572 | 44572 | 43562 |
2 (1000 copies/μL)b | 43662 | 43662 | 42652 | 43662 | 43662 | 43662 | 42652 |
3 (100 copies/μL) | 43662 | 43662 | 42652 | 4–662 | 4356 -c | 43662 | - 255c - |
4 (10 copies/μL) | 43662 | 43662 | - - 652 | 4–6-2 | - - - - - | 43662 | - - - - - |
5 (1 copy/μL) | 43662 | - - - - - | - - - - - | - - 6 - - | - - - - - | - - - - - | - - - - - |
6 | 43662 | 43662 | 42652 | 43662 | 43662 | 43662 | 42652 |
7 | 43662 | 43662d | 42652 | 43662 | 43662 | 43662 | 42652 |
8 | 53662 | 63662c | 52652 | 53662 | 53662 | 53662 | 52652 |
9 | 54572 | 54572 | 53562 | 54572 | 54572 | 54572 | 53562 |
10 | 63662 | 63662 | 62652d | 63662 | 63662 | 63662 | 62542c |
11 | 34572 | 34572 | 33562 | 34572 | 34572 | 34572 | 33562 |
12 (M129) | 44572 | 44572 | 43562 | 44572 | 44572 | 44572 | 43562 |
13 | 63562 | 63562 | 62552d | 63562 | 63562 | 63562 | 62552 |
14 | 33562 | 33562 | 32552 | 33562 | 33562 | 33562 | 32552 |
15 | 63562 | 63562 | 62552 | 63562 | 63562 | 63562 | 62552 |
16 | 53662 | 53662 | 52652 | 53662 | 53662 | 53662 | 52652 |
17 | 23662 | 23662 | 22652 | 23662 | 23662 | 23662 | 22652 |
18 | 44572 | 44572 | 43562 | 44572 | 44572 | 44572 | 43562 |
19 | 23562 | 23562 | 22552 | 23562 | 23562 | 23562 | 22552 |
20 | 43572 | 43572 | 42562 | 43572 | 43572 | 43572 | 42562 |
21 | 54572 | 54572 | 53562 | 54572 | 54572 | 54572 | 53542c |
22 | 54572 | 54572 | 53562 | 54572 | 54572 | 54572 | 53562 |
23 | 43662 | 43662 | 42652 | 43662 | 43662 | 43662 | 42652 |
24 | 34572 | 34572 | 33562 | 34572 | 34572 | 34572 | 33562 |
25 | 63562 | 63562 | 62552 | 63562 | 63562 | 63562 | 62552 |
26 | 34572 | 34572 | 33562 | 34572 | 34572 | 34572 | 33562 |
27 | 33662 | 33662 | 32652 | 33662 | 33662 | 33662 | 32652 |
28 | 23662 | 23662 | 22652 | 23662 | 23662 | 23662 | 22652 |
29 | 33662 | 33662 | 32652 | 33662 | 33662 | 33662 | 32652 |
30 | 54572 | - - - - - | - - - - - | 54572 | 5–572 | 54572 | - - 562c |
Repeat number different from the expected result are underlined. A hyphen indicates no amplification.
MLVA, multiple-locus variable-number tandem repeat analysis.
Naming of profiles was based on the method in which naming is based on a string of allele numbers in order of MPN1, MPN13, MPN14, MPN15 and MPN16 showing the actual number of repeats at each locus.
Samples 2, 3, 4 and 5 are dilutions of the NTCT10119 FH commercial standard strain with 1000, 100, 10 and 1 copies/μL, respectively.
MLVA profile remains different from the expected MLVA profile after correction for transcription errors and interpretation differences.
MLVA profiles with initial transcriptional errors.