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. 2015 Apr 24;5(7):1335–1349. doi: 10.1534/g3.115.017699

Table 3. Gene Ontology terms identified by Blast2GO analysis for contigs significantly upregulated at 25° (FDR 0.1, P < 0.01, >2-fold change).

GO Category GO ID Name GO ID Name # Contigs
Biological Process GO:0071840 Cellular component organization or biogenesis GO:0016043 Cellular component organization 124
GO:0007005 Mitochondrion organization 18
GO:0006996 Organelle organization 50
GO:0009987 Cellular process GO:0007154 Cell communication 11
GO:0007049 Cell cycle 87
GO:0008219 Cell death 129
GO:0019725 Cellular homeostasis 34
GO:0006464 Cellular protein modification process 175
GO:0007010 Cytoskeleton organization 85
GO:0007165 Signal transduction 337
GO:0006412 Translation 27
GO:0032502 Developmental process GO:0009653 Anatomical structure morphogenesis 202
GO:0030154 Cell differentiation 152
GO:0009790 Embryo development 87
GO:0007275 Multicellular organismal development 315
GO:0040007 Growth GO:0016049 Cell growth 21
GO:0008152 Metabolic process GO:0009058 Biosynthetic process 155
GO:0005975 Carbohydrate metabolic process 27
GO:0009056 Catabolic process 170
GO:0006259 DNA metabolic process 43
GO:0006091 Generation of precursor metabolites and energy 11
GO:0006629 Lipid metabolic process 68
GO:0006139 Nucleobase-containing compound metabolic process 127
GO:0044238 Primary metabolic process 6
GO:0019538 Protein metabolic process 216
GO:0019748 Secondary metabolic process 6
GO:0051704 Multi-organism process GO:0044403 Symbiosis, encompassing mutualism through parasitism 20
GO:0016032 Viral process 20
GO:0050789 Regulation of biological process GO:0040029 Regulation of gene expression, epigenetic 4
GO:0000003 Reproduction 91
GO:0050896 Response to stimulus GO:0007610 Behavior 33
GO:0009628 Response to abiotic stimulus 51
GO:0009607 Response to biotic stimulus 83
GO:0009719 Response to endogenous stimulus 46
GO:0009605 Response to external stimulus 100
GO:0006950 Response to stress 237
GO:0044699 Single-organism process GO:0008283 Cell proliferation 91
GO:0008037 Cell recognition 26
GO:0007267 Cell–cell signaling 18
GO:0006810 Transport GO:0006811 Ion transport 52
GO:0015031 Protein transport 66
Molecular Function GO:0016209 Antioxidant activity 7
GO:0005488 Binding GO:0003779 Actin binding 34
GO:0005509 Calcium ion binding 51
GO:0030246 Carbohydrate binding 11
GO:0003682 Chromatin binding 22
GO:0008092 Cytoskeletal protein binding 20
GO:0003677 DNA binding 142
GO:1901363 Heterocyclic compound binding 1
GO:0008289 Lipid binding 33
GO:0003676 Nucleic acid binding 48
GO:0000166 Nucleotide binding 262
GO:0097159 Organic cyclic compound binding 1
GO:0005515 Protein binding 498
GO:0005102 Receptor binding 83
GO:0003723 RNA binding 42
GO:0008135 Translation factor activity, nucleic acid binding 5
GO:0003824 Catalytic activity GO:0016787 Hydrolase activity 98
GO:0016301 Kinase activity 15
GO:0003774 Motor activity 2
GO:0004518 Nuclease activity 6
GO:0008233 Peptidase activity 46
GO:0004721 Phosphoprotein phosphatase activity 26
GO:0004672 Protein kinase activity 58
GO:0016740 Transferase activity 89
GO:0009055 Electron carrier activity 19
GO:0030234 Enzyme regulator activity 66
GO:0060089 Molecular transducer activity GO:0004871 Signal transducer activity 13
GO:0001071 Nucleic acid binding transcription factor activity GO:0003700 Sequence-specific DNA binding transcription factor activity 95
GO:0004872 Receptor activity 43
GO:0005198 Structural molecule activity 10
GO:0005215 Transporter activity GO:0005216 Ion channel activity 6
Cellular Component GO:0030313 Cell envelope 1
GO:0071944 Cell periphery GO:0030312 External encapsulating structure 1
GO:0005886 Plasma membrane 134
GO:0005737 Cytoplasm GO:0016023 Cytoplasmic membrane-bounded vesicle 68
GO:0005829 Cytosol 134
GO:0005811 Lipid particle 9
GO:0005576 Extracellular region GO:0005615 Extracellular space 38
GO:0005578 Proteinaceous extracellular matrix 22
GO:0043226 Organelle GO:0005694 Chromosome 37
GO:0005929 Cilium 4
GO:0005856 Cytoskeleton 82
GO:0005783 Endoplasmic reticulum 115
GO:0005768 Endosome 19
GO:0072546 ER membrane protein complex 1
GO:0005794 Golgi apparatus 48
GO:0005764 Lysosome 6
GO:0005815 Microtubule organizing center 32
GO:0005739 Mitochondrion 78
GO:0000228 Nuclear chromosome 20
GO:0005635 Nuclear envelope 14
GO:0005730 Nucleolus 86
GO:0005654 Nucleoplasm 166
GO:0005634 Nucleus 233
GO:0005777 Peroxisome 3
GO:0005840 Ribosome 8
GO:0005773 Vacuole 5
GO:0043234 Protein complex 290

The three GO categories, Biological Process, Molecular Function, and Cellular Component, are presented along with GO terms of children and number of contigs assigned each term.