Table 3. Gene Ontology terms identified by Blast2GO analysis for contigs significantly upregulated at 25° (FDR 0.1, P < 0.01, >2-fold change).
GO Category | GO ID | Name | GO ID | Name | # Contigs |
---|---|---|---|---|---|
Biological Process | GO:0071840 | Cellular component organization or biogenesis | GO:0016043 | Cellular component organization | 124 |
GO:0007005 | Mitochondrion organization | 18 | |||
GO:0006996 | Organelle organization | 50 | |||
GO:0009987 | Cellular process | GO:0007154 | Cell communication | 11 | |
GO:0007049 | Cell cycle | 87 | |||
GO:0008219 | Cell death | 129 | |||
GO:0019725 | Cellular homeostasis | 34 | |||
GO:0006464 | Cellular protein modification process | 175 | |||
GO:0007010 | Cytoskeleton organization | 85 | |||
GO:0007165 | Signal transduction | 337 | |||
GO:0006412 | Translation | 27 | |||
GO:0032502 | Developmental process | GO:0009653 | Anatomical structure morphogenesis | 202 | |
GO:0030154 | Cell differentiation | 152 | |||
GO:0009790 | Embryo development | 87 | |||
GO:0007275 | Multicellular organismal development | 315 | |||
GO:0040007 | Growth | GO:0016049 | Cell growth | 21 | |
GO:0008152 | Metabolic process | GO:0009058 | Biosynthetic process | 155 | |
GO:0005975 | Carbohydrate metabolic process | 27 | |||
GO:0009056 | Catabolic process | 170 | |||
GO:0006259 | DNA metabolic process | 43 | |||
GO:0006091 | Generation of precursor metabolites and energy | 11 | |||
GO:0006629 | Lipid metabolic process | 68 | |||
GO:0006139 | Nucleobase-containing compound metabolic process | 127 | |||
GO:0044238 | Primary metabolic process | 6 | |||
GO:0019538 | Protein metabolic process | 216 | |||
GO:0019748 | Secondary metabolic process | 6 | |||
GO:0051704 | Multi-organism process | GO:0044403 | Symbiosis, encompassing mutualism through parasitism | 20 | |
GO:0016032 | Viral process | 20 | |||
GO:0050789 | Regulation of biological process | GO:0040029 | Regulation of gene expression, epigenetic | 4 | |
GO:0000003 | Reproduction | 91 | |||
GO:0050896 | Response to stimulus | GO:0007610 | Behavior | 33 | |
GO:0009628 | Response to abiotic stimulus | 51 | |||
GO:0009607 | Response to biotic stimulus | 83 | |||
GO:0009719 | Response to endogenous stimulus | 46 | |||
GO:0009605 | Response to external stimulus | 100 | |||
GO:0006950 | Response to stress | 237 | |||
GO:0044699 | Single-organism process | GO:0008283 | Cell proliferation | 91 | |
GO:0008037 | Cell recognition | 26 | |||
GO:0007267 | Cell–cell signaling | 18 | |||
GO:0006810 | Transport | GO:0006811 | Ion transport | 52 | |
GO:0015031 | Protein transport | 66 | |||
Molecular Function | GO:0016209 | Antioxidant activity | 7 | ||
GO:0005488 | Binding | GO:0003779 | Actin binding | 34 | |
GO:0005509 | Calcium ion binding | 51 | |||
GO:0030246 | Carbohydrate binding | 11 | |||
GO:0003682 | Chromatin binding | 22 | |||
GO:0008092 | Cytoskeletal protein binding | 20 | |||
GO:0003677 | DNA binding | 142 | |||
GO:1901363 | Heterocyclic compound binding | 1 | |||
GO:0008289 | Lipid binding | 33 | |||
GO:0003676 | Nucleic acid binding | 48 | |||
GO:0000166 | Nucleotide binding | 262 | |||
GO:0097159 | Organic cyclic compound binding | 1 | |||
GO:0005515 | Protein binding | 498 | |||
GO:0005102 | Receptor binding | 83 | |||
GO:0003723 | RNA binding | 42 | |||
GO:0008135 | Translation factor activity, nucleic acid binding | 5 | |||
GO:0003824 | Catalytic activity | GO:0016787 | Hydrolase activity | 98 | |
GO:0016301 | Kinase activity | 15 | |||
GO:0003774 | Motor activity | 2 | |||
GO:0004518 | Nuclease activity | 6 | |||
GO:0008233 | Peptidase activity | 46 | |||
GO:0004721 | Phosphoprotein phosphatase activity | 26 | |||
GO:0004672 | Protein kinase activity | 58 | |||
GO:0016740 | Transferase activity | 89 | |||
GO:0009055 | Electron carrier activity | 19 | |||
GO:0030234 | Enzyme regulator activity | 66 | |||
GO:0060089 | Molecular transducer activity | GO:0004871 | Signal transducer activity | 13 | |
GO:0001071 | Nucleic acid binding transcription factor activity | GO:0003700 | Sequence-specific DNA binding transcription factor activity | 95 | |
GO:0004872 | Receptor activity | 43 | |||
GO:0005198 | Structural molecule activity | 10 | |||
GO:0005215 | Transporter activity | GO:0005216 | Ion channel activity | 6 | |
Cellular Component | GO:0030313 | Cell envelope | 1 | ||
GO:0071944 | Cell periphery | GO:0030312 | External encapsulating structure | 1 | |
GO:0005886 | Plasma membrane | 134 | |||
GO:0005737 | Cytoplasm | GO:0016023 | Cytoplasmic membrane-bounded vesicle | 68 | |
GO:0005829 | Cytosol | 134 | |||
GO:0005811 | Lipid particle | 9 | |||
GO:0005576 | Extracellular region | GO:0005615 | Extracellular space | 38 | |
GO:0005578 | Proteinaceous extracellular matrix | 22 | |||
GO:0043226 | Organelle | GO:0005694 | Chromosome | 37 | |
GO:0005929 | Cilium | 4 | |||
GO:0005856 | Cytoskeleton | 82 | |||
GO:0005783 | Endoplasmic reticulum | 115 | |||
GO:0005768 | Endosome | 19 | |||
GO:0072546 | ER membrane protein complex | 1 | |||
GO:0005794 | Golgi apparatus | 48 | |||
GO:0005764 | Lysosome | 6 | |||
GO:0005815 | Microtubule organizing center | 32 | |||
GO:0005739 | Mitochondrion | 78 | |||
GO:0000228 | Nuclear chromosome | 20 | |||
GO:0005635 | Nuclear envelope | 14 | |||
GO:0005730 | Nucleolus | 86 | |||
GO:0005654 | Nucleoplasm | 166 | |||
GO:0005634 | Nucleus | 233 | |||
GO:0005777 | Peroxisome | 3 | |||
GO:0005840 | Ribosome | 8 | |||
GO:0005773 | Vacuole | 5 | |||
GO:0043234 | Protein complex | 290 |
The three GO categories, Biological Process, Molecular Function, and Cellular Component, are presented along with GO terms of children and number of contigs assigned each term.