Table 2. Summary of improved genome assembly.
Scaffolds | Length (Mb) | Genes | ||||
---|---|---|---|---|---|---|
Chr | Original | Revised | Original | Revised | Original | Revised |
1 | 8 | 13 | 28.18 | 29.63 | 1262 | 1328 |
2 | 4 | 5 | 23.29 | 23.7 | 861 | 907 |
3 | 5 | 10 | 16.79 | 17.8 | 934 | 1004 |
4 | 8 | 12 | 32.63 | 34.14 | 1329 | 1410 |
5 | 6 | 9 | 12.25 | 15.56 | 733 | 861 |
6 | 5 | 8 | 17.08 | 18.85 | 721 | 760 |
7 | 7 | 12 | 27.93 | 30.84 | 1320 | 1481 |
8 | 6 | 7 | 19.36 | 20.53 | 885 | 924 |
9 | 9 | 11 | 20.24 | 20.58 | 1012 | 1016 |
10 | 2 | 8 | 15.66 | 18.03 | 816 | 931 |
11 | 7 | 10 | 16.7 | 17.64 | 1060 | 1108 |
12 | 6 | 13 | 18.4 | 20.76 | 1007 | 1138 |
13 | 6 | 9 | 20.08 | 20.74 | 971 | 1014 |
14 | 3 | 7 | 15.24 | 16.17 | 739 | 792 |
15 | 5 | 8 | 16.19 | 17.32 | 778 | 823 |
16 | 3 | 7 | 18.11 | 19.52 | 803 | 864 |
17 | 6 | 8 | 14.6 | 20.25 | 702 | 1064 |
18 | 4 | 3 | 16.28 | 15.99 | 764 | 739 |
19 | 3 | 5 | 20.24 | 20.61 | 1046 | 1086 |
20 | 5 | 8 | 19.73 | 20.45 | 934 | 990 |
21 | 5 | 13 | 11.71 | 17.35 | 464 | 614 |
Total | 113 | 186 | 400.7 | 436.45 | 19,141 | 20,854 |
A comparison of the original genome assembly and the revised scaffold order presented in this study. The number of scaffolds, the physical size in megabases (Mb), and the number of Ensembl-predicted genes (Jones et al. 2012) are compared.