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. Author manuscript; available in PMC: 2015 Jul 15.
Published in final edited form as: Nat Protoc. 2010 Feb 18;5(3):439–456. doi: 10.1038/nprot.2009.226

TABLE 3.

Troubleshooting table.

Step Problem Possible reason Solution
22 Incomplete anesthesia: persistent response to toe pinch High tolerance or clearance Administer additional 10% volume ketamine/xylazine (or corresponding isoflurane increment)
31 Poor cannula positioning observed during histological validation
Excess bleeding after craniotomy
Stereotactic coordinates based on brain atlas are not accurate for the experimental animal age or strain
Vessel trauma
Tune the co-ordinates for age and species
Place cotton swab over craniotomy site. When hemostasis is achieved, irrigate craniotomy site with sterile saline
33 Excess bleeding after cannula placement Vessel trauma Place cotton swab over craniotomy site. When hemostasis is achieved, irrigate the site with sterile saline
37 No solution can be injected Needles may clog after advancement through intact tissue Replace the needle
46 No electrical signal is recorded
Electrical noise observed during recording
Optical stimulation does not modulate physiology
Sensitive electrode tip has been damaged by contact
Ground loop present in the setup
Opsin-expressing cells may be distant from recording electrode
After confirming integrity of electrical connections, replace electrode
Check all converging grounds to the table and the table ground to the amplifier. Confirm that the ground wire is in contact with the tissue and provide ~30–50 μl saline to the ground wire to ensure electrical connectivity
Calculate relevant scattering parameters (accounting for light wavelength, intensity and source geometry) in the context of local neuroanatomy. Optrode may need to be redesigned accordingly or optrode positioning may need to be revised by complete retraction and replacement
56 Fiber breakage during behavior Rotational behavior results in fiber torsion Employ fiberoptic commutator to relieve torsion; some light loss may result