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. 2015 Jul 15;10(7):e0133282. doi: 10.1371/journal.pone.0133282

Table 1. Oligonucleotide primers used for amplification of ORF3 mutants.

The lowercase letters in the universal sense primer represent the Kozak sequence and those in the antisense primers signify mutagenic nucleotides altering single P to A. N/A, not applicable.

Primer Sequence Restriction site Mutagenic nucleotides
universal sense primer 5ʹ-CCGGAATTCgccaccATGgcaCCACCATGCGCT-3ʹ EcoR I N/A
Anti-sense primers Wild type 5ʹ-CCGCTCGAGACGGCGAAGCCCCAGC-3ʹ XhoI N/A
P99A 5ʹ-CCGCTCGAGACGGCGAAGCCCCAGCTGGGGCAGATCGACGACGGGCGGGAGCGGagcGG-3ʹ XhoI cgg → agc
P100A 5ʹ-CCGCTCGAGACGGCGAAGCCCCAGCTGGGGCAGATCGACGACGGGCGGGAGagcCG-3ʹ XhoI cgg → agc
P102A 5ʹ-CCGCTCGAGACGGCGAAGCCCCAGCTGGGGCAGATCGACGACGGGagcGA-3ʹ XhoI cgg → agc
P103A 5ʹ-CCGCTCGAGGGCGAAGCCCCAGCTGGGGCAGATCGACGACagcCG-3ʹ XhoI ggg → agc