Table 1. Oligonucleotide primers used for amplification of ORF3 mutants.
The lowercase letters in the universal sense primer represent the Kozak sequence and those in the antisense primers signify mutagenic nucleotides altering single P to A. N/A, not applicable.
Primer | Sequence | Restriction site | Mutagenic nucleotides | |
---|---|---|---|---|
universal sense primer | 5ʹ-CCGGAATTCgccaccATGgcaCCACCATGCGCT-3ʹ | EcoR I | N/A | |
Anti-sense primers | Wild type | 5ʹ-CCGCTCGAGACGGCGAAGCCCCAGC-3ʹ | XhoI | N/A |
P99A | 5ʹ-CCGCTCGAGACGGCGAAGCCCCAGCTGGGGCAGATCGACGACGGGCGGGAGCGGagcGG-3ʹ | XhoI | cgg → agc | |
P100A | 5ʹ-CCGCTCGAGACGGCGAAGCCCCAGCTGGGGCAGATCGACGACGGGCGGGAGagcCG-3ʹ | XhoI | cgg → agc | |
P102A | 5ʹ-CCGCTCGAGACGGCGAAGCCCCAGCTGGGGCAGATCGACGACGGGagcGA-3ʹ | XhoI | cgg → agc | |
P103A | 5ʹ-CCGCTCGAGGGCGAAGCCCCAGCTGGGGCAGATCGACGACagcCG-3ʹ | XhoI | ggg → agc |