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. 2015 Jul 15;10(7):e0132961. doi: 10.1371/journal.pone.0132961

Table 4. Putative identification of OTUs according to MiCA3 virtual digest (http://mica.ibest.uidaho.edu/digest.php) and abundance of the identified organisms.

C: Control, T: tetracycline supplementation, G: ginger supplementation, I: inulin supplementation.

OTU Treatment combinations Enzyme Organism identified [Reference for categorization]
C vs. T C vs. G C vs. I T vs. G T vs. I G vs. I
Beneficial organisms
32 * MspI Butyrivibrio fibrisolvens [31]
79 * * MspI Parabacteroides distasonis [32]
93 * * MspI Bacteroides intestinalis [33]
151 * BsuRI Denitrobacter sp. [34]
164 * * MspI Phascolarctobacterium faecium [35]
195 * * BsuRI Methylobacterium sp. [36]
223 * * MspI Eubacterium oxidoreducens [37]
280 * BsuRI Lactobacillus ruminis [38]
288 * * * MspI Selenomonas sp. [39]
298 * * * MspI Selenomonas infelix [40]
325 Sau3AI Anaerovibrio lipolyticus [41]
Pathogenic organisms
66 * Sau3AI Flavobacterium sp. [42]
227 * BsuRI Paenibacillus sp. [43]
229 * * * Sau3AI Atopostipes suicloacalis [44]
243 * * Sau3AI Bartonellaquintana str. Toulouse [45]

↑ Increased, ↓ Decreased, ≈ No change

* significant change (p<0.05)