Table 4. Putative identification of OTUs according to MiCA3 virtual digest (http://mica.ibest.uidaho.edu/digest.php) and abundance of the identified organisms.
OTU | Treatment combinations | Enzyme | Organism identified [Reference for categorization] | |||||
---|---|---|---|---|---|---|---|---|
C vs. T | C vs. G | C vs. I | T vs. G | T vs. I | G vs. I | |||
Beneficial organisms | ||||||||
32 | ↑* | ↑ | ↑ | ↓ | ↓ | ↑ | MspI | Butyrivibrio fibrisolvens [31] |
79 | ↑* | ≈ | ≈ | ↓ | ↓* | ≈ | MspI | Parabacteroides distasonis [32] |
93 | ↑ | ↑* | ↑* | ↑ | ↑ | ↑ | MspI | Bacteroides intestinalis [33] |
151 | ≈ | ↑ | ↑* | ↑ | ↑ | ↓ | BsuRI | Denitrobacter sp. [34] |
164 | ↑* | ↑* | ≈ | ↓ | ↓ | ↓ | MspI | Phascolarctobacterium faecium [35] |
195 | ≈ | ↑ | ↑* | ↑ | ↑* | ↓ | BsuRI | Methylobacterium sp. [36] |
223 | ↓ | ↑ | ↑* | ↑ | ↑* | ↑ | MspI | Eubacterium oxidoreducens [37] |
280 | ↑* | ↑ | ↑ | ↓ | ↓ | ↓ | BsuRI | Lactobacillus ruminis [38] |
288 | ↓ | ↑* | ↑* | ↑ | ↑* | ↓ | MspI | Selenomonas sp. [39] |
298 | ↓ | ↑ | ↑* | ↑* | ↑* | ↓ | MspI | Selenomonas infelix [40] |
325 | ≈ | ↑ | ↑ | ↑ | ↑ | ≈ | Sau3AI | Anaerovibrio lipolyticus [41] |
Pathogenic organisms | ||||||||
66 | ↓* | ↓ | ↓ | ↑ | ≈ | ↓ | Sau3AI | Flavobacterium sp. [42] |
227 | ↑* | ≈ | ↑ | ↓ | ↓ | ↑ | BsuRI | Paenibacillus sp. [43] |
229 | ↑* | ↓ | ↓ | ↓* | ↓* | ≈ | Sau3AI | Atopostipes suicloacalis [44] |
243 | ↑ | ↓* | ≈ | ↓* | ↓ | ↑ | Sau3AI | Bartonellaquintana str. Toulouse [45] |
↑ Increased, ↓ Decreased, ≈ No change
* significant change (p<0.05)