Table 7. Top 10 significantly down- and up-regulated GO categories in the samples.

GO term	Total genes	DEGs	FDR	Level	Description
Wat6 down-regulation
GO:0001071	1345	330	1.08E-26	2	nucleic acid binding transcription factor activity
GO:0003700	1345	330	1.08E-26	3	sequence-specific DNA binding transcription factor activity
GO:0032774	2282	480	1.24E-23	6	RNA biosynthetic process
GO:0006351	2276	479	1.24E-23	6	transcription, DNA-dependent
GO:0044271	2774	550	2.82E-21	5	cellular nitrogen compound biosynthetic process
GO:0034654	2580	511	2.07E-19	5	nucleobase-containing compound biosynthetic process
GO:0018130	2786	542	4.34E-19	5	heterocycle biosynthetic process
GO:0003677	2302	460	5.56E-18	5	DNA binding
GO:0019438	2870	549	8.31E-18	5	aromatic compound biosynthetic process
GO:0015979	192	77	1.32E-17	4	photosynthesis
GO:0003735	471	140	8.19E-35	3	structural constituent of ribosome
GO:0005840	538	149	1.38E-33	4	ribosome
GO:0005198	606	152	4.09E-29	2	structural molecule activity
GO:0016491	1856	320	7.09E-29	3	oxidoreductase activity
GO:0022626	198	77	3.09E-27	5	cytosolic ribosome
GO:0044445	243	82	3.37E-24	5	cytosolic part
GO:0006412	671	151	8.03E-24	6	translation
GO:0044391	216	76	9.29E-24	4	ribosomal subunit
GO:0005576	1222	221	6.56E-22	2	extracellular region
GO:0030529	801	161	3.92E-20	3	ribonucleoprotein complex
Wat24 down-regulation
GO:0015074	1125	201	1.01E-15	6	DNA integration
GO:0001071	1345	221	9.96E-14	2	nucleic acid binding transcription factor activity
GO:0003700	1345	221	9.96E-14	3	sequence-specific DNA binding transcription factor activity
GO:0090304	4585	585	9.96E-14	5	nucleic acid metabolic process
GO:1901360	5919	722	1.50E-13	4	organic cyclic compound metabolic process
GO:0046483	5667	693	4.67E-13	4	heterocycle metabolic process
GO:0006139	5376	660	1.40E-12	4	nucleobase-containing compound metabolic process
GO:0006725	5817	704	2.03E-12	4	cellular aromatic compound metabolic process
GO:0034641	5701	689	6.26E-12	4	cellular nitrogen compound metabolic process
GO:0006351	2276	322	7.93E-12	6	transcription, DNA-dependent
Wat24 up-regulation
GO:0005840	538	297	2.94E-139	4	ribosome
GO:0003735	471	277	2.94E-139	3	structural constituent of ribosome
GO:0005198	606	289	1.48E-113	2	structural molecule activity
GO:0006412	671	288	7.86E-99	6	translation
GO:0030529	801	312	3.08E-94	3	ribonucleoprotein complex
GO:0044391	216	146	4.33E-84	4	ribosomal subunit
GO:0022626	198	132	1.15E-74	5	cytosolic ribosome
GO:0043228	1628	418	2.78E-63	3	non-membrane-bounded organelle
GO:0043232	1628	418	2.78E-63	4	intracellular non-membrane-bounded organelle
GO:0044445	243	136	4.18E-63	5	cytosolic part
Wat24:Wat6 down-regulation
GO:0042221	2287	182	3.10E-14	3	response to chemical stimulus
GO:0016491	1856	156	4.56E-14	3	oxidoreductase activity
GO:0009719	1364	117	1.32E-10	3	response to endogenous stimulus
GO:0009733	367	50	1.97E-10	5	response to auxin stimulus
GO:0050896	5231	312	1.72E-09	2	response to stimulus
GO:0009725	1235	105	2.38E-09	4	response to hormone stimulus
GO:0010033	1584	125	2.60E-09	4	response to organic substance
GO:0080167	105	24	3.30E-09	4	response to karrikin
GO:0010378	9	8	2.57E-08	4	temperature compensation of the circadian clock
GO:0071365	247	36	2.57E-08	6	cellular response to auxin stimulus
Wat24:Wat6 up-regulation
GO:0005840	538	170	2.50E-45	4	ribosome
GO:0003735	471	153	1.95E-42	3	structural constituent of ribosome
GO:0005198	606	168	7.43E-37	2	structural molecule activity
GO:0006412	671	166	7.35E-30	6	translation
GO:0030529	801	177	1.26E-25	3	ribonucleoprotein complex
GO:0044391	216	77	1.31E-23	4	ribosomal subunit
GO:0022626	198	69	1.67E-20	5	cytosolic ribosome
GO:0043228	1628	273	1.67E-20	3	non-membrane-bounded organelle
GO:0043232	1628	273	1.67E-20	4	intracellular non-membrane-bounded organelle
GO:0044445	243	70	1.20E-15	5	cytosolic part