|
Pinus contorta hypocotyl cuttings treated with 1.23 mM IBA [
6
]
|
root initiation and meristem formation |
2,178 |
220 (fold change>2) |
Cell replication: histone H3, CDC2. Cell wall weakening: cellulose, pectate lyase, endoxyloglucan transferase. Cell wall synthesis: arabinogalactan protin, peroxidase. Protein synthesis: ribosomal proteins. Protein assembly and folding: protein disulfide isomerase. Stress response: pathogenesis-related protein, late embryogenesis-abundant proteins. Auxin transport: ABC transporter, integral membrane transporter. Signal transduction: PINHEAD/ZWILLE-like protein, DNA binding protein, B-box zinc finger like protein. Protein degradation: ubiquitin-like proteins. |
Photosynthesis: PS II protein, chloroplast proteins. Cell wall weakening: pectate lyase. Cell wall synthesis: arabinogalactan protin, caffeoyl-CoA-methyltransferase. Protein degradation: ubiquitin-like proteins. Stress response: late embryogenesis-abundant proteins, water stress inducible proteins. Flavonoid pathway: naringinin, 2-oxogluterate-3 dioxygenase, flavoprotein monooxygenase. Auxin signaling: auxin-repressed proteins, ABC transporter, AUX1-like, SAMS. Signal transduction: protein kinase PK-1. Transcription factors: EREBP. |
|
Camellia sinensis L. single nodal cuttings treated with 0.4 mM IBA [
46
]
|
24 h after treatment compared with the control |
1,091 |
656 up-regulated and 435 down-regulated (fold change>2) |
Plant hormone signaling: GH3, indole-3-acetate O-methyltransferase, cytokinin oxidases. Secondary metabolism: flavonoid biosynthesis, isoprenoid biosynthesis, 3-hydroxy-3-methylglutaryl-Co A reductase (mevalonate pathway). Cell wall modification: expansins, pectinesterase, cellulase, leucine-rich repeat extension, cellulose synthase. Transcription factor: bHLH135. Glutathione metabolism: glutathione synthetase, glutathione S-transferases. |
Plant hormone signaling: adenylate isopentenyltransferase, cytokinin hydroxylases. Secondary metabolism: 2-C-methyl-d-erythritol 4-phosphate pathway, 1-deoxy-D-xylulose-5-phosphate synthase, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, geranyl pyrophosphate synthase. |
|
Populus trichocarpa stem cuttings without auxin [
9
]
|
root primordium organization and differentiation comparison with the dormant stage |
55,970 |
7,107 (fold change>5) |
Cell wall remodeling: glycoside hydrolases, pectate lyases, pectin esterases, expansins. Plant hormone signaling: auxin-, gibberellin-, ethylene-responsive genes. Signal transduction: Ser/Thr protein kinases. Transcription factors: lateral root primordium, AP2/ERF, MYB, NAC, WRKY, bHLH. AP2/ERF family: SCARECROW-like6, PISTILLATA, AINTEGUMENTA LIKE1, WRKY75. |
|
|
Vigna radiata L. seedling cuttings without auxin
|
root induction compared with the control |
78,697 |
11,717 (fold change>2), 2,945 up-regulated and 8,772 down-reglated |
Stress response: peroxidase, pathogenesis-related protein, 7-ethoxycoumarin O-deethylase-like, low-temperature-induced 65 kDa protein-like, early nodulin-like protein 1-like (phytocyanin), late embryogenesis abundant protein. Flavonoid biosynthesis: anthocyanin metabolism-associated, flavone metabolism-associated. Cell wall remodeling: polygalacturonase (pectin lyase), endoglucanase 17-like, peroxidase, basic chitinase. Auxin signaling: auxin efflux carrier, auxin-binding protein ABP19a-like. Signal transduction: proline-rich protein. Transcription factors: ERF086-like, MYB114. Protein synthesis: ef1a. Protein degradation: metacaspase-9-like (a peptidase), vignain-like (a peptidase), trypsin protease inhibitor precursor. Lipid metabolism: patatin group A-3-like (phospholipase). |
Protein degradation: E3 ubiquitin-protein ligase, polyprotein precursor (peptidase). Protein folding: heat shock 70 kDa protein-like. Auxin signaling: ABC transporter G family member 22-like, auxin-induced protein 5NG4-like. Amino metabolism: serine glyoxylate aminotransferase. Transporters: S-type anion channel SLAH3-like, organic cation transport protein. Signal transduction: histidine kinase. Transcription factor: MYB134. |
|
root initiation compared with the control |
78,697 |
12,737, 3,434 up-regulated and 9,303 down- regulated |
Stress response: peroxidase, pathogen-related protein, 7-ethoxycoumarin O-deethylase-like. Cell wall remodeling: polygalacturonase, basic chitinase. Protein degradation: trypsin protease inhibitor precursor. Lipid metabolism: patatin (phospholipase). Transcription factor: ERF086-like. Transporters: potassium transporter 5-like. Signal transduction: proline-rich protein. Unknown: casparian strip membrane protein. |
Protein degradation: polyprotein precursor. Auxin signaling: auxin-induced protein 5NG4-like. |
