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. 2015 Jul 16;6:708. doi: 10.3389/fmicb.2015.00708

Table 1.

Sequence analysis of the seven loci studies for Vibrio parahaemolyticus and Vibrio cholerae.

Locus (length in pb) Number of alleles GC content Number of polymorphic sites (%) Number of non-synomynous codons Genetic diversity (h) dN a dS b dN/dS
Vibrio cholerae adk (416 bp) 27 0.485 27 (6.49%) 4 0.8862 0.0037 0.0267 0.1386
gyrB (431 bp) 36 0.497 40 (9.28%) 1 0.9344 0.0031 0.0556 0.0558
mdh (421 bp) 30 0.517 33 (7.84%) 0 0.9269
metE (591 bp) 53 0.49 109 (18.44%) 16 0.9659 0.0041 0.1675 0.0245
pntA (431 bp) 42 0.513 38 (8.82%) 4 0.9709 0.0034 0.0425 0.0800
purM (476 bp) 18 0.531 62 (13.03%) 0 0.6984
pyrC (449 bp) 50 0.504 105 (23.39%) 18 0.9743 0.0108 0.1854 0.0583
Vibrio parahaemolyticus dnaE (557 bp) 53 0.486 127 (22.80%) 16 0.9837 0.0045 0.1173 0.0384
gyrB (592 bp) 54 0.477 62 (10.47%) 4 0.9860 0.0088 0.1045 0.0842
tnaA (423 bp) 34 0.488 27 (6.38%) 1 0.9308 0.0030 0.0430 0.0698
recA (729 bp) 51 0.452 150 (20.58%) 16 0.9847 0.0034 0.1590 0.0214
pyrC (493 bp) 49 0.483 41 (8.32%) 7 0.9747 0.0036 0.0511 0.0705
pntA (430 bp) 35 0.438 29 (6.74%) 4 0.9512 0.0031 0.0389 0.0797
dtdS (458 bp) 49 0.501 62 (13.54%) 3 0.9831 0.0101 0.4641 0.0218
a

dN, non-synonymous substitutions per non-synonymous site.

b

dS, synonymous substitutions per synonymous site.