Table 1.
Sequence analysis of the seven loci studies for Vibrio parahaemolyticus and Vibrio cholerae.
| Locus (length in pb) | Number of alleles | GC content | Number of polymorphic sites (%) | Number of non-synomynous codons | Genetic diversity (h) | dN a | dS b | dN/dS | |
|---|---|---|---|---|---|---|---|---|---|
| Vibrio cholerae | adk (416 bp) | 27 | 0.485 | 27 (6.49%) | 4 | 0.8862 | 0.0037 | 0.0267 | 0.1386 |
| gyrB (431 bp) | 36 | 0.497 | 40 (9.28%) | 1 | 0.9344 | 0.0031 | 0.0556 | 0.0558 | |
| mdh (421 bp) | 30 | 0.517 | 33 (7.84%) | 0 | 0.9269 | – | – | – | |
| metE (591 bp) | 53 | 0.49 | 109 (18.44%) | 16 | 0.9659 | 0.0041 | 0.1675 | 0.0245 | |
| pntA (431 bp) | 42 | 0.513 | 38 (8.82%) | 4 | 0.9709 | 0.0034 | 0.0425 | 0.0800 | |
| purM (476 bp) | 18 | 0.531 | 62 (13.03%) | 0 | 0.6984 | – | – | – | |
| pyrC (449 bp) | 50 | 0.504 | 105 (23.39%) | 18 | 0.9743 | 0.0108 | 0.1854 | 0.0583 | |
| Vibrio parahaemolyticus | dnaE (557 bp) | 53 | 0.486 | 127 (22.80%) | 16 | 0.9837 | 0.0045 | 0.1173 | 0.0384 |
| gyrB (592 bp) | 54 | 0.477 | 62 (10.47%) | 4 | 0.9860 | 0.0088 | 0.1045 | 0.0842 | |
| tnaA (423 bp) | 34 | 0.488 | 27 (6.38%) | 1 | 0.9308 | 0.0030 | 0.0430 | 0.0698 | |
| recA (729 bp) | 51 | 0.452 | 150 (20.58%) | 16 | 0.9847 | 0.0034 | 0.1590 | 0.0214 | |
| pyrC (493 bp) | 49 | 0.483 | 41 (8.32%) | 7 | 0.9747 | 0.0036 | 0.0511 | 0.0705 | |
| pntA (430 bp) | 35 | 0.438 | 29 (6.74%) | 4 | 0.9512 | 0.0031 | 0.0389 | 0.0797 | |
| dtdS (458 bp) | 49 | 0.501 | 62 (13.54%) | 3 | 0.9831 | 0.0101 | 0.4641 | 0.0218 |
a
dN, non-synonymous substitutions per non-synonymous site.
b
dS, synonymous substitutions per synonymous site.