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. 2015 Jun 1;11(7):3499–3509. doi: 10.1021/acs.jctc.5b00356

Table 2. Results of Aqueous Phase Simulations for the Alanine Pentapeptide and Glycine Tripeptide with OPLS-AA, OPLS-AA/L, and New Parameters Employing Different Boltzmann Weighting Temperatures.

  χ2 model 1 χ2 model 2 χ2 model 3 % alpha % beta % PPII
Ala5
OPLS-AA 2.31 ± 0.03 2.60 ± 0.05 (1.87 ± 0.01) 2.73 ± 0.03 14.3 ± 1.0 48.0 ± 0.3 36.9 ± 0.6
OPLS-AA/L 2.35 ± 0.04 4.96 ± 0.19 (2.51 ± 0.05) 3.36 ± 0.09 29.6 ± 1.3 31.5 ± 0.6 38.0 ± 0.8
500 K 1.51 ± 0.01 2.49 ± 0.02 (1.12 ± 0.01) 1.88 ± 0.01 15.0 ± 0.8 35.5 ± 0.3 46.0 ± 0.4
1000 K 1.22 ± 0.03 2.67 ± 0.02 (0.86 ± 0.02) 1.66 ± 0.02 14.6 ± 0.5 32.1 ± 0.3 50.4 ± 0.7
2000 K (OPLS-AA/M) 1.16 ± 0.02 2.61 ± 0.02 (0.80 ± 0.02) 1.61 ± 0.01 11.7 ± 0.8 33.1 ± 0.5 53.5 ± 0.2
unweighted 3.56 ± 0.16 3.83 ± 0.07 (3.52 ± 0.20) 3.99 ± 0.18      
Gly3
OPLS-AA 6.29 ± 0.04 (4.31 ± 0.03) 8.97 ± 0.02 (6.81 ± 0.02) 7.71 ± 0.03 (5.44 ± 0.03)      
OPLS-AA/L 6.40 ± 0.05 (4.79 ± 0.07) 8.45 ± 0.07 (7.21 ± 0.10) 7.11 ± 0.06 (5.84 ± 0.09)      
500 K 3.87 ± 0.07 (2.01 ± 0.06) 5.11 ± 0.09 (3.38 ± 0.09) 4.20 ± 0.08 (2.33 ± 0.07)      
1000 K 3.31 ± 0.04 (1.50 ± 0.03) 4.32 ± 0.06 (2.69 ± 0.05) 3.52 ± 0.05 (1.75 ± 0.04)      
2000 K (OPLS-AA/M) 3.11 ± 0.07 (1.37 ± 0.08) 4.02 ± 0.08 (2.48 ± 0.08) 3.28 ± 0.08 (1.58 ± 0.07)      
unweighted 3.71 ± 0.03 (1.41 ± 0.01) 4.40 ± 0.02 (2.36 ± 0.01) 3.77 ± 0.02 (1.56 ± 0.01)