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. 2015 Jul 16;59(8):4584–4592. doi: 10.1128/AAC.00551-15

TABLE 2.

Different manually curated GO terms related to the unfolded protein response and their associated transcripts that are activated in response to carvacrol

GO term category Genes in response to:
Carvacrol (5 min) Carvacrol (30 min)
Vesicle-mediated transport ENT2, YSC84, UBP15, PEP3, ECM21, OBPA, RVS167, SDS24, SEC18, SRO77, VPS15, VPS21, VPS35, VPS4, CSP37 LSB5, SEM11, DDI1, GDI1, SEC18, TRX1, DID2, VPS8, EFM4
Proteolytic degradation NPL4, PR26, PRE3, PRE5, PUP1, RPN10, RPN2, RPT1 VPS4, UBP15, LAP41, DOA4, DOA1, CYM1, UBP2, CDC48, PBN1, PRE4, EAR1, SAN1, RQC1, PNG1, MNL1, UBP14, UBX5, UBP12, UBP16, PRB1, LAP4, RPN9, RPN12, HOD1, UBP2, ASI3, DDI1, PIM1, PRE1, PRE3, PRE9, PUP2, RPT2 RPN9, RPN12, SEM1, CDC48, UBP2, ASI3, DDI1, JEM1, PIM1, PRE1, PRE3, PRE9, PUP2, RPT2
Protein folding FMO1, HSP104, HSP70, HSP78, TRX1, RBP1, JEM1, CYP5 CYP5, JEM1, RBP1, TRX1, HSP12, orf19.4216
Amino acid metabolism SHM2, SER33, STR2, TRP5, LYS4, LYS1, LYS2, SER1 MET15, MET10, ARO8, ARO3, ARG1, AAT1 MUP1, ALP1, AGP2, AGP3, HIP1, MET3, MET6
Lipid metabolism LCB4, PLC2, TGL1, ROG1, OBPA, ORM1, YDC1 VPS4, GPI15, ALG13, SMP2, HAL22, POX1, NPR1, PBN1, GPI13, PDR16, PEX5, SCT1, HFD1, YJU3, YFT2, YEH1, GPI15, IFA38, PEX6, PLC1, PLC2, RTA2 MIT1, MCR1, ERG4, ERG2 HFD1, YJU3, YFT2, YEH1, GPI15, IFA38, ERG2, ERG4, MCR1, MIT1, MLS1, PEX6, PLC1, PLC2, RTA2
Cellular transport CDR1, GAP2, GNP1, AQY1, ITR1, AGP3, HGT20, ATM1, SUL2, MEP1, HIP1, HAK1, CRP1 ALP1, ATX1, CDR1 CRP1, YET3, DDI1, GDI1, MEP1, HAK1, MIM1, RTA2, SUL2, SIT1
Cell wall proteins and biogenesis ALS1, ECM29, MNN4, ECM15, DDR48, PHR1, BMT4 CAS5, PHR1, WSC4, RHD3, ENG1, CSH1, CSP37, ALS1, BMT4