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. 2015 Apr 23;290(25):15421–15436. doi: 10.1074/jbc.M115.655845

TABLE 5.

Summary of the per-residue theoretical interaction energies (kcal/mol) (MM-GBSA) for 7 at neutral and slightly acidic pH conditions for residues in the 44RKNR47 motif and other key residues (those that contribute more than 1.5 kcal/mol to the interaction energy)

Key differences in energetic contributions to binding, at neutral and slightly acidic pH, are highlighted in bold/italics.

Neutral pH Slightly acidic pH
kcal/mol kcal/mol
44RKNR47 A −27.9 −27.8
44RKNR47 B 26.6 40.6
N terminus A −12.5 −14.8
N terminus B −2.9 −5.8
Arg-47 A 8.3 14.0
Arg-47 B 14.0 16.1
Arg-17 A −1.9 −1.9
Arg-17 B 13.9 12.4
His-23 A −0.9 5.9
His-23 B −2.2 8.7
Chain A −52.3 −56.7
Chain B −50.5 −73.4
Total MM-GBSAa −135.2 −182.2

a Total from both monomers, conformational entropic effects not included.