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. 2015 May 11;290(25):15717–15729. doi: 10.1074/jbc.M114.618355

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© 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

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FIGURE 1. — Unrooted phylogenetic tree of the HMA5–8 subgroup of heavy metal ATPases from selected plants. The analysis was performed using maximum likelihood method in MEGA version 6.0 following sequence alignment in ClustalW and was tested by 1000 bootstrap replicates. The lengths of branches are proportional to phylogenetic distances. Different groups within P_1B1-ATPase subfamily are indicated by shaded circles. Cucumber HMA5.1 and HMA5.2 proteins are marked in bold. The sequences used for analysis are available under the following accession numbers: AtHMA5 (At1g63440.1); AtHMA6 (At4g33520.1); AtHMA7 (At5g44790.1); AtHMA8 (At5g21930.1); OsHMA4 (Os02g10290); OsHMA5 (Os04g46940); OsHMA6 (Os02g07630); OsHMA7 (Os08g37950); OsHMA8 (Os03g08070); PtHMA5.1 (eugene3.00030979); PtHMA5.2 (fgenesh4_pg.C_LG_I000939); PtHMA5.3 (estExt_Genewise1_v1.C_LG_III2138); PtHMA5.4 (eugene3.00010321); PtHMA6.1 (gw1.III.2222.1); PtHMA6.2 (gw1.I.66.1); PtHMA7.1 (estExt_Genewise1_v1.C_290004); PtHMA7.2 (fgenesh4_pg.C_LG_III000552); CrHMA6 (SKA_Chlre2_kg.scaffold_8000202); CrHMA7.1 (SKA_Chlre2_kg.scaffold_45000101); CrHMA7.2 (HAN_e_gwW.35.64.1); SmHMA5.1 (e_gw1.6.816.1); SmHMA5.2 (e_gw1.13.638.1); SmHMA5.3 (fgenesh1_pm.C_scaffold_13000004); SmHMA6 (e_gw1.93.138.1); SmHMA7.1 (fgenesh1_pm.C_scaffold_42000009); SmHMA7.2 (e_gw1.67.167.1); SmHMA8 (gw1.3.975.1); PpHMA6.1 (e_gw1.19.16.1); PpHMA6.2 (estExt_Genewise1.C_1210028); PpHMA7.1 (fgenesh1_pg.scaffold_94000062); PpHMA7.2 (estExt_gwp_gw1.C_1840090); PpHMA8 (e_gw1.197.110.1); SbHMA5.1 (Sb06g024900); SbHMA5.2 (Sb06g024910); SbHMA5.3 (estExt_Genewise1.C_chr_41453); SbHMA6 (estExt_Genewise1.C_chr_78080); SbHMA8(Sb01g045340); VvHMA5.1 (XP_002269802); VvHMA5.2 (XP_002269758);VvHMA5.3 (XP_002269839); VvHMA5.4 (XP_002282923); VvHMA6.1 (XP_002274497); VvHMA6.2 (XP_002274497); VvHMA7 (XP_002276004); and VvHMA8 (XP_002280050). Cucumber proteins CsHMA6, CsHMA7, and CsHMA8 were annotated based on the genes identified in contigs ACHR01001184.1, ACHR01000228.1, and ACHR01004999.1, respectively, of cucumber Chinese long genome (20). Two CsHMA5.1 and CsHMA5.2 sequences are available under accession numbers KJ818254 and KJ818255, respectively.