TABLE 3.
Virus | Expt no. and plaque no. | DI clone | Polaritya | No. of hypermutations observed/no. of total nucleotidesb | % editingc |
---|---|---|---|---|---|
vac2-CKO | 2.1 | 06/12 | U → C | 36/111 | 31.5 |
2.3 | 08/03 | U → C | 6/141 | 4.3 | |
3.1 | 20/05 | U → C | 16/126 | 12.7 | |
IC323-CKO | 1.2 | 58/04 | U → C | 5/52 | 9.6 |
1.3 | 59/03d | A → G | 17/67 | 25.4 | |
2.2 | 60/06 | U → C | 8/21 | 38.1 | |
3.1 | 62/04d | U → C | 19/54 | 35.2 | |
3.1 | 62/06d | A → G | 28/67 | 41.8 | |
3.1 | 62/11d | U → C | 11/54 | 20.4 |
Polarity indicates whether the hypermutations were observed as A → G or U → C in the genomic orientation.
The number of mutations observed/number of total nucleotides of the respective type (A or U) in a cluster.
The percentage is the calculated frequency of transitions observed over possible events.
These sequences were derived through semispecific hybridization of primer A2 at position −15670 of the MV genome.