Table 2.
Gene name | Protein family | Degree | BC | CC |
---|---|---|---|---|
ITGB1 | Integrins | 33 | 0.2 | 0.5 |
FN1 | Fibronectin | 30 | 0.1 | 0.5 |
EGFR | Epidermal growth factor receptors | 26 | 0.2 | 0.5 |
ITGA3 | Integrins | 25 | 0.03 | 0.5 |
ITGAV | 24 | 0.03 | 0.5 | |
ITGB3 | 23 | 0.02 | 0.5 | |
COL1A1 | Collagens | 22 | 0.02 | 0.5 |
CD9 | Tetraspanins | 21 | 0.1 | 0.5 |
ITGB4 | Integrins | 20 | 0.04 | 0.5 |
ITGA5 | 19 | 0.04 | 0.5 | |
ITGB8 | 18 | 0.01 | 0.4 | |
ITGB5 | 17 | 0.01 | 0.4 | |
ITGA2 | 17 | 0.01 | 0.4 |
Half of the maximum degree and BC of the network were used as the critical point of high degree and high BC nodes and in order to check topological centrality of hubs and bottlenecks in the network, CC values of the protein set were measured. The proteins from integrin, fibronectin, epidermal growth factor receptor, collagens and tetraspanin protein families are hub nodes that have a large BC
BC betweennes centrality, CC closeness centrality