Table 1.
Rodent-Borne Hantaviruses Included in the Analyses of Nucleotide and Amino Acid Sequences
| GenBank accession numbersc | ||||||
|---|---|---|---|---|---|---|
| Virusa | Strain(s) | Hostb | Country | N protein | GPC | RdRp |
| DOBV | Ano-poroia/Afl9/1999 | Afla | Greece | AJ410615 | AJ410616 | AJ410617 |
| HTNV | 76–118 | Aagr | South Korea | M14626 | M14627 | X55901 |
| SAAV | Saaremaa–160v | Aagr | Estonia | AJ009773 | AJ009774 | AJ410618 |
| SEOV | 80–39 | Rnor | South Korea | AY273791 | S47716 | X56492 |
| THAIV | 741 (Thai749) | Bind | Thailand | AB186420 | (L08756) | (No data) |
| ISLAV | MC-SB-47 | Mcal | United States | U19302 | (No data) | (No data) |
| KHAV | MF-43 | Mfor | Russia | U35255 | AJ011648 | (No data) |
| PHV | PH-1 | Mpen | United States | M34011 | X55129 | EF646763 |
| PUUV | Sotkamo | Mgla | Finland | X61035 | X61034 | Z66548 |
| TOPV | Ls136V | Lsib | Russia | AJ011646 | AJ011647 | (no data) |
| TULV | Tula/Moravia/5302v | Marv | Czech Republic | Z69991 | Z69993 | AJ005637 |
| CARV | 26/2006 | Rsum | Mexico | AB620103 | AB620104 | AB620105 |
| ELMCV | RM-97 | Rmeg | USA | U11427 | U26828 | (no data) |
| HUIV | 200/2006 | Rmeg | Mexico | AB620106 | AB620107 | AB620108 |
| MTNV | 104/2006 | Pbea | Mexico | AB620100 | AB620101 | AB620102 |
| NYVd | Rhode Island-1 | Hsap | United States | U09488 | U36801 | (No data) |
| RIOSV | RMx-Costa-1 | Rmex | Costa Rica | U18100 | (No data) | (No data) |
| SNVd | NM R11 | Pman | United States | L37904 | L37903 | L37902 |
| ANAJVd | H759113/BRA270 | Hsap | Brazil | JX443690 | (No data) | (No data) |
| ANDVd | Chile-9717869 | Olon | Chile | AF291702 | AF291703 | AF291704 |
| ARAUVd | HPR/03–99 | Hsap | Brazil | AY740630 | (No data) | (No data) |
| ARAVd | P5/Cajuru | Hsap | Brazil | EF571895 | (No data) | (No data) |
| BAYVd | HV F0260003 | Opal | United States | GQ200820 | GQ244521 | GQ244526 |
| BCCVd | SPB 9408076 | Shis | United States | L39949 | L39950 | (No data) |
| BMJVd | Oc22531 | Ocha | Argentina | AF482713 | (No data) | (No data) |
| CADV | VHV-574 | Sals | Venezuela | DQ285566 | DQ284451 | GQ200821 |
| CASVd | AN717313/BRA300 | Outi | Brazil | JX443692 | JX443702 | JX443698 |
| CATV | HV C1280001 | Ocou | Honduras | DQ256126 | DQ177347 | FJ858378 |
| CHOVd | 588 | Oful | Panama | DQ285046 | DQ285047 | EF397003 |
| JUQVd | LH_076_12 | Hsap | Brazil | JX173798 | (No data) | (No data) |
| LANVd | 510B | Clau | Paraguay | AF005727 | AF005728 | AF005729 |
| LECVd | 22819 | Ofla | Argentina | AF482714 | AF028022 | (No data) |
| MAPV | HV 97021050 | Odel | Venezuela | AY267347 | AY363179 | EU788002 |
| MCLV | 13796 | Nben | Argentina | AF482716 | (No data) | (No data) |
| MULV | SH-Tx-339 | Shis | United States | U54575 | (No data) | (No data) |
| NECV | HV O-0020003 | Zche | Colombia | KF481954 | KF494345 | KF735065 |
| ORNVd | 22996 | Olon | Argentina | AF482715 | AF028024 | (No data) |
| PRGV | 14403 | Aaza | Argentina | AF482717 | (No data) | (No data) |
| RIOMVd | HTN-007 | Omic | Peru | FJ532244 | FJ608550 | FJ809772 |
Hantaviruses principally associated with: Murine rodents (Muridae, Murinae)—DOBV, Dobrava-Belgrade virus; HTNV, Hantaan virus; SAAV, Saaremaa virus; SEOV, Seoul virus; THAIV, Thailand virus. Arvicoline rodents (Cricetidae, Arvicolinae)—ISLAV, Isla Vista virus; KHAV, Khabarovsk virus; PHV, Prospect Hill virus; PUUV, Puumala virus; TOPV, Topografov virus; TULV, Tula virus. Neotomine rodents (Cricetidae, Neotominae)—CARV, Carrizal virus; ELMCV, El Moro Canyon virus; HUIV, Huitzilac virus; MTNV, Montano virus; NYV, New York virus; RIOSV, Rio Segundo virus; SNV, Sin Nombre virus. Sigmodontine rodents (Cricetidae, Sigmodontinae)—ANAJV, Anajatuba virus; ANDV, Andes virus; ARAUV, Araucaria virus; ARAV, Araraquara virus; BAYV, Bayou virus; BCCV, Black Creek Canal virus; BMJV, Bermejo virus; CADV, Caño Delgadito virus; CASV, Castelo dos Sonhos virus; CATV, Catacamas virus; CHOV, Choclo virus; JUQV, Juquitiba virus; LANV, Laguna Negra virus; LECV, Lechiguanas virus; MAPV, Maporal virus; MCLV, Maciel virus; MULV, Muleshoe virus; NECV, Necoclí virus; ORNV, Orán virus; PRGV, Pergamino virus; RIOMV, Rio Mamoré virus. Italicized names indicate species recognized by the International Committee on Taxonomy for Viruses (Plyusnin et al. 2012).
Afla, Apodemus flavicollis; Aagr, Apodemus agrarius; Rnor, Rattus norvegicus; Bind, Bandicota indica; Mcal, Microtus californicus; Mfor, Microtus fortis; Mpen, Microtus pennsylvanicus; Mgla, Myodes glareolus; Lsib, Lemmus sibiricus; Marv, Microtus arvalis; Rsum, Reithrodontomys sumichrasti; Rmeg, Reithrodontomys megalotis; Pbea, Peromyscus beatae; Hsap, Homo sapiens; Rmex, Reithrodontomys mexicanus; Pman, Peromyscus maniculatus; Olon, Oligoryzomys longicaudatus; Opal, Oryzomys palustris; Shis, Sigmodon hispidus; Ocha, Oligoryzomys chacoensis; Sals, Sigmodon alstoni; Outi, Oligoryzomys utiaritensis; Ocou, Oryzomys couesi; Oful, Oligoryzomys fulvescens; Clau, Calomys laucha; Ofla, Oligoryzomys flavescens; Odel, Oligoryzomys delicatus; Nben, Necromys benefactus; Zche, Zygodontomys cherriei; Aaza, Akodon azarae; Omic, Oligoryzomys microtis.
N protein, nucleocapsid protein gene; GPC, glycoprotein precursor gene; RdRp, RNA-dependent RNA polymerase gene.
Etiologic agent of hantavirus pulmonary syndrome.