TABLE 4.
Observed proportions of HIV-1C sequences in clusters in a large set of sequences (n = 547)
| Locus | No. (proportion) of HIV-1C sequences in clusters at a bootstrap support of splits of: |
|||
|---|---|---|---|---|
| ≥0.70 | ≥0.8 | ≥0.9 | 1.0 | |
| Amplicon 1 | 251 (0.459)a,b | 215 (0.393)a,b | 159 (0.291)a,b | 88 (0.161)a,b |
| Amplicon 1 + V1C5 | 267 (0.488)a | 220 (0.402)a,b | 181 (0.331)a,b | 122 (0.223)a,b |
| ViroSeq | 120 (0.219) | 90 (0.165) | 73 (0.133) | 34 (0.062) |
| V1C5 | 135 (0.247) | 114 (0.208) | 88 (0.161) | 44 (0.080) |
a
P < 0.001 for comparison to ViroSeq (Fisher exact test).
b
P < 0.001 for comparison to V1C5 (Fisher exact test).