Table 1. Description of the miR-15b and miR-16 putative targets downregulated under hyperosmotic conditions.
Gene Name | Description | Seed Length | Seed Sequence | Binding Start | Binding End | mRNA Region |
---|---|---|---|---|---|---|
Aatf | Apoptosis antagonizing transcription factor | 7 | AGCAGCA | 1751 | 1745 | 3 UTR |
Bfar | Bifunctional apoptosis regulator | 8 | AGCAGCAC | 1606 | 1599 | 3 UTR |
C3ar1 | Complement component 3a receptor 1 | 7 | UAGCAGC | 1924 | 1918 | 3 UTR |
Dcbld2 | Discoidin, CUB and LCCL domain containing 2 | 8 | AGCAGCAC | 2334 | 2327 | 3 UTR |
Gstm3 | Glutathione S-transferase mu 3 | 7 | AGCAGCA | 1160 | 1154 | 3 UTR |
Ikbkb | Inhibitor of kappa light polypeptide: enhancer in B-cell | 9 | UAGCAGCAC | 2584 | 2576 | 3 UTR |
Irak2 | Interleukin-1 receptor-associated kinase 2 | 8 | UAGCAGCA | 2628 | 2621 | 3 UTR |
Itgal | Integrin, alpha L | 7 | UAGCAGC | 3960 | 3954 | 3 UTR |
Leprot | Leptin receptor overlapping transcript | 8 | UAGCAGCA | 1646 | 1639 | 3 UTR |
Nanp | N-acetylneuraminic acid phosphatase | 7 | AGCAGCA | 915 | 909 | 3 UTR |
Nras | Neuroblastoma RAS viral oncogene homolog | 7 | AGCAGCA | 771 | 765 | 3 UTR |
Oas1b | 2′-5′-oligoadenylate synthetase 1 | 8 | UAGCAGCA | 1776 | 1769 | 3 UTR |
Sema4a | Sema domain, immunoglobulin domain | 7 | AGCAGCA | 2781 | 2775 | 3 UTR |
Slc11a2 | Solute carrier family 11, member 2 | 8 | UAGCAGCA | 1998 | 1991 | 3 UTR |
Slc16a6 | Solute carrier family 16 member 6 | 7 | AGCAGCA | 1939 | 1933 | 3 UTR |
Tbp | TATA box binding protein | 9 | UAGCAGCAC | 1440 | 1432 | 3 UTR |
Them4 | Thioesterase superfamily member 4 | 8 | AGCAGCAC | 1342 | 1335 | 3 UTR |
Zfp105 | Zinc finger protein 105 | 8 | UAGCAGCA | 1861 | 1854 | 3 UTR |
Analysis of both bioinformatics (miRWalk) and gene chip data led to 18 potential target genes of the miR-15a, miR-15b and miR-16.
Predicted binding sites within the 3′UTR of the potential target genes are listed. Among them, several genes are involved in apoptotic processes, such as Aatf, Bfar or Ikbkb.