Table 1.
Quantitative overview on the transcriptome sequencing data
| (A) Illumina sequencing – quantitative overview | |||
| Immune challenged | Non-immune challenged | ||
| Sequencing | Paired end 2 x 50 bp | ||
| Total number of reads | 125,873,897 | 118,142,837 | |
| Median insert length (bp) | 176 bp | 163 bp | |
| Overall mapping rate | 87.4 % | 88.6 % | |
| Mapping to Camponotus genome | 99.45 % | 99.37 % | |
| Mapping to Blochmannia genome | 0.55 % | 0.63 % | |
| (B) Repeats distribution | |||
| Number of elements | Length occupied | Percentage of sequence | |
| LTR elements | 662 | 445,584 bp | 0.19 % |
| DNA elements | 163 | 44,183 bp | 0.02 % |
| Unclassified | 41,722 | 14,401,396 bp | 6.13 % |
| Total interspersed repeats | - | 14,891,163 bp | 6.34 % |
| Small RNA | 26 | 13,938 bp | 0.01 % |
| Satellites | 50 | 9914 bp | 0.00 % |
| Simple repeats | 67,608 | 3,996,593 bp | 1.70 % |
| Low complexity | 284,104 | 15,360,412 bp | 6.54 % |