Table 2.
Top 0.1 % SNPs that are highly differentiated between the Malays from northern and southern region of Peninsular (total SNP = 42633)
| rsID | Chr | Position | Minor allele | FST | MAF_North | MAF_South | Gene | Category |
|---|---|---|---|---|---|---|---|---|
| rs4149264 | 9 | 107,677,211 | C | 0.2256 | 0.4856 | 0.1682 | ABCA1 | intronic |
| rs10102377 | 8 | 83,762,822 | T | 0.2251 | 0.4097 | 0.2336 | ||
| rs4148475 | 13 | 95,853,574 | A | 0.2242 | 0.4676 | 0.184 | ABCC4 | intronic |
| rs1056836 | 2 | 38,298,203 | G | 0.2037 | 0.4757 | 0.1934 | CYP1B1 | coding |
| rs1126965 | 17 | 70,642,790 | G | 0.1931 | 0.5 | 0.1822 | SLC39A11 | 3utr |
| rs17769090 | 15 | 70,630,120 | A | 0.1636 | 0.4648 | 0.2381 | ||
| rs6974363 | 7 | 47,633,187 | G | 0.1421 | 0.493 | 0.2333 | ||
| rs837395 | 1 | 47,269,338 | A | 0.1400 | 0.4897 | 0.2383 | CYP4B1 | intronic |
| rs4646430 | 2 | 38,306,415 | G | 0.1384 | 0.4621 | 0.1981 | ||
| rs215101 | 16 | 16,052,973 | G | 0.1206 | 0.4752 | 0.271 | ABCC1 | intronic |
| rs12920607 | 16 | 73,728,620 | C | 0.1183 | 0.475 | 0.2736 | ||
| rs837398 | 1 | 47,266,422 | A | 0.1124 | 0.4897 | 0.2664 | CYP4B1 | intronic |
| rs809367 | 10 | 89,741,806 | A | 0.1088 | 0.4307 | 0.2009 | ||
| rs316133 | 6 | 52,847,551 | C | 0.0957 | 0.4823 | 0.2594 | GSTA4 | intronic |
| rs6130511 | 20 | 42,681,088 | A | 0.0916 | 0.2801 | 0.1 | TOX2 | intronic |
| rs2132845 | 4 | 140,587,125 | T | 0.0910 | 0.4255 | 0.215 | MGST2 | 5utr |
| rs5761313 | 22 | 26,313,745 | T | 0.0887 | 0.4964 | 0.2804 | MYO18B | intronic |
| rs10485805 | 20 | 54,945,783 | G | 0.0853 | 0.4397 | 0.2336 | AURKA | intronic |
| rs10489142 | 1 | 7,363,310 | G | 0.0835 | 0.4507 | 0.3364 | CAMTA1 | intronic |
| rs2274928 | 13 | 24,044,546 | A | 0.0779 | 0.3601 | 0.4346 | LINC00327 | intronic |
| rs11935505 | 4 | 145,226,422 | A | 0.0758 | 0.04643 | 0.1682 | ||
| rs1566869 | 12 | 52,266,348 | A | 0.0695 | 0.3406 | 0.1682 | ||
| rs1884897 | 20 | 6,612,832 | G | 0.0695 | 0.2812 | 0.1215 | ||
| rs4530975 | 7 | 104,415,415 | T | 0.0679 | 0.1862 | 0.05607 | LHFPL3 | intronic |
| rs6024831 | 20 | 54,938,464 | G | 0.0675 | 0.4161 | 0.3915 | FAM210B | intronic |
| rs1160798 | 6 | 112,438,446 | C | 0.0661 | 0.06897 | 0.1934 | LAMA4 | intronic |
| rs2158196 | 4 | 114,416,596 | C | 0.0658 | 0.2391 | 0.09434 | CAMK2D | intronic |
| rs16961766 | 13 | 103,899,499 | A | 0.0645 | 0.3143 | 0.1524 | ||
| rs10962015 | 9 | 15,387,949 | A | 0.0638 | 0.2482 | 0.1028 | ||
| rs6884962 | 5 | 172,682,382 | A | 0.0623 | 0.4896 | 0.3271 | ||
| rs17126776 | 12 | 39,311,625 | A | 0.0603 | 0.1759 | 0.3318 | ||
| rs2755209 | 13 | 41,137,804 | C | 0.0602 | 0.25 | 0.1075 | FOXO1 | intronic |
| rs9783586 | 13 | 108,361,559 | T | 0.0601 | 0.2671 | 0.4393 | FAM155A | intronic |
| rs10968093 | 9 | 27,753,227 | A | 0.0594 | 0.06338 | 0.1776 | ||
| rs2458286 | 8 | 103,978,699 | T | 0.0591 | 0.4424 | 0.3774 | ||
| rs4875364 | 8 | 4,444,592 | C | 0.0583 | 0.3094 | 0.1557 | CSMD1 | intronic |
| rs11145506 | 9 | 80,264,584 | T | 0.0578 | 0.3821 | 0.217 | GNA14 | intronic |
| rs11604366 | 11 | 28,887,766 | C | 0.0577 | 0.2695 | 0.4387 | ||
| rs9881633 | 3 | 112,881,539 | T | 0.0574 | 0.3 | 0.472 | RP11_572M11.3 | intronic |
| rs5762448 | 22 | 28,408,444 | C | 0.0573 | 0.3514 | 0.1916 | TTC28 | intronic |
| rs6467991 | 7 | 83,954,737 | C | 0.0570 | 0.344 | 0.4811 | ||
| rs10089677 | 8 | 122,660,248 | A | 0.0569 | 0.2329 | 0.09813 | ||
| rs1923254 | 13 | 41,084,241 | G | 0.0567 | 0.3776 | 0.2143 | ||
| rs7813806 | 8 | 5,142,665 | C | 0.0567 | 0.2817 | 0.1355 | ||
| rs7625411 | 3 | 112,811,428 | A | 0.0564 | 0.3403 | 0.486 | ||
| rs2922249 | 6 | 127,954,614 | C | 0.0564 | 0.09441 | 0.2196 | ||
| rs2294088 | 8 | 124,526,607 | A | 0.0564 | 0.4514 | 0.2804 | FBXO32 | intronic |
| rs12289262 | 11 | 12,894,758 | T | 0.0560 | 0.3986 | 0.2336 | TEAD1 | intronic |
| rs4937523 | 11 | 130,347,190 | T | 0.0558 | 0.2937 | 0.4626 | ADAMTS15 | intronic |
| rs10807768 | 7 | 13,662,014 | A | 0.0554 | 0.3169 | 0.1651 | ||
| rs976272 | 14 | 61,449,328 | A | 0.0551 | 0.4897 | 0.3178 | SLC38A6 | coding |
| rs13027801 | 2 | 143,602,503 | C | 0.0551 | 0.2862 | 0.4533 | ||
| rs17701834 | 19 | 22,121,458 | G | 0.0549 | 0.2172 | 0.08879 | ||
| rs7193843 | 16 | 54,677,292 | G | 0.0548 | 0.1448 | 0.285 | ||
| rs7097885 | 10 | 16,506,501 | C | 0.0542 | 0.2832 | 0.4486 | PTER | intronic |
| rs2791398 | 1 | 245,965,551 | G | 0.0540 | 0.05944 | 0.1651 | SMYD3 | intronic |
| rs10486802 | 7 | 39,723,768 | A | 0.0531 | 0.1884 | 0.07009 | RALA | intronic |
| rs8031676 | 15 | 96,910,440 | C | 0.0529 | 0.4306 | 0.2664 | ||
| rs7186479 | 16 | 82,602,736 | C | 0.0527 | 0.2517 | 0.1168 | ||
| rs6054383 | 20 | 6,584,604 | T | 0.0526 | 0.3986 | 0.2383 | ||
| rs4460308 | 7 | 104,420,060 | C | 0.0521 | 0.1866 | 0.07009 | LHFPL3 | intronic |
| rs3775779 | 4 | 70,709,207 | A | 0.0520 | 0.476 | 0.3551 | SULT1E1 | intronic |
| rs9375877 | 6 | 132,690,239 | G | 0.0517 | 0.4862 | 0.3458 | MOXD1 | intronic |
| rs2180691 | 20 | 54,964,361 | A | 0.0517 | 0.45 | 0.2857 | AURKA | intronic |
| rs7778955 | 7 | 39,740,487 | G | 0.0517 | 0.1438 | 0.04206 | RALA | intronic |
| rs4608114 | 12 | 92,384,658 | A | 0.0517 | 0.4366 | 0.2736 | C12orf79 | intronic |
| rs6946733 | 7 | 106,670,288 | A | 0.0514 | 0.4281 | 0.2664 | ||
| rs816650 | 10 | 601,089 | T | 0.0514 | 0.114 | 0.2406 | DIP2C | intronic |
| rs6490805 | 13 | 24,084,809 | C | 0.0507 | 0.08394 | 0.1981 | ||
| rs17171480 | 7 | 35,585,669 | A | 0.0506 | 0.09286 | 0.2103 | ||
| rs17015112 | 3 | 77,319,487 | G | 0.0505 | 0.4545 | 0.3785 | ROBO2 | intronic |
| rs573186 | 3 | 124,178,276 | C | 0.0503 | 0.2483 | 0.1168 | KALRN | intronic |
| rs10752609 | 1 | 154,791,128 | A | 0.0501 | 0.3147 | 0.1698 | KCNN3 | intronic |
| rs1862737 | 16 | 75,281,964 | C | 0.0500 | 0.4155 | 0.257 | BCAR1 | 5utr |