Table 2.
An example of searching the neighbourhood instances of a reference l-mer.
| Reference l-mer: ACCACGTG (l, d) = (8, 1) z = 19.36 C 1 = 119 C 2 = 9 | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Position | Instance | z | C 1 | C 2 | Position | Instance | z | C 1 | C 2 |
| i = 1 | CCCACGTG | 21.78 | 146 | 11 | i = 2 | AACACGTG | 11.83 | 51 | 5 |
| GCCACGTG | 26.14 | 177 | 7 | AGCACGTG | 22.66 | 149 | 9 | ||
| TCCACGTG | 15.93 | 91 | 9 | ATCACGTG | 3.28 | 16 | 6 | ||
|
| |||||||||
| i = 3 | ACAACGTG | 2.38 | 9 | 4 | i = 4 | ACCCCGTG | 2.88 | 15 | 6 |
| ACGACGTG | 1.82 | 7 | 3 | ACCGCGTG | 8.23 | 25 | 3 | ||
| ACTACGTG | 1.31 | 5 | 3 | ACCTCGTG | 6.16 | 23 | 5 | ||
|
| |||||||||
| i = 5 | ACCAAGTG | −0.73 | 7 | 9 | i = 6 | ACCACATG | 0.14 | 27 | 26 |
| ACCAGGTG | −0.12 | 14 | 14 | ACCACCTG | −0.30 | 17 | 18 | ||
| ACCATGTG | 2.88 | 48 | 30 | ACCACTTG | −2.08 | 2 | 8 | ||
|
| |||||||||
| i = 7 | ACCACGAG | 5.92 | 24 | 5 | i = 8 | ACCACGTA | −0.07 | 3 | 3 |
| ACCACGCG | 8.63 | 30 | 4 | ACCACGTC | 1.03 | 7 | 5 | ||
| ACCACGGG | 3.53 | 14 | 5 | ACCACGTT | −0.05 | 4 | 4 | ||