. 2015 Jul 22;16:88. doi: 10.1186/s12863-015-0227-7

Table 4.

Correlation coefficients between different estimates for inbreeding from different data sets for JER

Correlation		F_PED	50k SNP chip data				Sequence data
Correlation		F_PED	F_ROH	F_GRM	F_HOM	F_UNI	F_ROH	F_{ROH> 1Mb}	F_{ROH> 3Mb}	F_GRM	F_HOM	F_UNI
F_PED		1	0.47*	−0.18	0.46*	0.25	0.46*	0.52*	0.53*	−0.21	0.60**	0.43*
50k SNP chip data	F_ROH		1	0.36	0.06	0.79**	0.92**	0.93**	0.96**	0.29	0.67**	0.96**
	F_GRM			1	−0.89**	0.80**	0.19	0.16	0.22	0.86**	−0.34	0.44*
	F_HOM				1	0.24	0.28	0.21	−0.76**	0.66**	−0.01	0.24
	F_UNI					0.67**	0.67**	0.71**	0.69**	0.20	0.84**	0.67**
Sequence data	F_ROH						1	0.99**	0.96**	0.14	0.76**	0.92**
	F_{ROH> 1Mb}							1	0.97**	0.094	0.80**	0.91**
	F_{ROH> 3Mb}								1	0.20	0.74**	0.95**
	F_GRM									1	−0.48*	0.42*
	F_HOM										1	0.60**
	F_UNI											1

*: significantly different from 0 at p < 0.05; **: significantly different from 0 at p < 0.01. F_PED is the inbreeding coefficient estimated from pedigree data. F_ROH is inbreeding coefficient estimated based on ROH for 50k data and for sequence data F_{ROH> 1Mb} and F_{ROH> 3Mb} are also reported. F_GRM is GRM-based inbreeding coefficient estimated from 50k and sequence data. F_HOM is inbreeding coefficient estimated based on excess of homozygosity for 50k and sequence data. F_UNI is the inbreeding coefficient estimated based on correlation of uniting gametes for 50k and sequence data