TABLE 3.
Strain | V2 | V6 | V11 | V13 | V17 | V19 | V33 | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TR | bp |
TR | bp |
TR | bp |
TR | bp |
TR | bp |
TR | bp |
TR | bp |
||||||||
DNA | CE | DNA | CE | DNA | CE | DNA | CE | DNA | CE | DNA | CE | DNA | CE | ||||||||
S14 | 5 | 263 | 274 | 2 | 218 | 225 | 1 | 255 | 264 | 3.6 | 192 | 202 | 3.4 | 249 | 254 | 2 | 244 | 242 | 2 | 271 | 275 |
S12 | 5 | 265 | 275 | 2 | 218 | 225 | 2 | 264 | 274 | 3.6 | 192 | 201 | 4 | 259 | 267 | 2 | 244 | 242 | 2 | 271 | 276 |
K7 | 5 | 265 | 274 | 3 | 226 | 233 | 1 | 255 | 263 | 3.6 | 192 | 199 | 4 | 259 | 267 | 2.8 | 260 | 255 | 2 | 271 | 277 |
T9 | 5.9 | 277 | 287 | 2 | 218 | 224 | 1 | 255 | 263 | 4 | 205 | 209 | 4 | 259 | 270 | 0b | 144 | 128 | 2 | 270 | 273 |
S6 | 6.5 | 283 | 294 | 2 | 218 | 225 | 1 | 255 | 262 | 4.8 | 211 | 220 | 4 | 262 | 269 | 2.8 | 260 | 255 | 2 | 270 | 273 |
T7 | 5 | 265 | 274 | 2 | 218 | 224 | 1 | 255 | 263 | 3.6 | 192 | 201 | 3.4 | 247 | 256 | 2.8 | 260 | 254 | 2 | 271 | 275 |
T10 | 5.9 | 275 | 285 | 2 | 219 | 225 | 1 | 256 | 264 | 4 | 201 | 213 | 3.4 | 250 | 256 | 0b | 143 | 127 | 2 | 271 | 275 |
S9 | 11.5 | 344 | 352 | — | — | — | — | — | — | 7 | 271 | 275 | — | — | — | — | — | — | — | — | — |
ATCC33560 | 3 | 244 | 255 | 2 | 218 | 223 | 1 | 255 | 263 | 2 | 171 | 180 | 4 | 260 | 265 | 0b | 143 | 126 | 2 | 271 | 276 |
JCM2013 | 5 | 267 | 275 | 2 | 218 | 223 | 1 | 257 | 263 | 3.6 | 192 | 202 | 4 | 259 | 265 | 0b | 143 | 127 | 3 | 279 | 284 |
TR, number of TRs; DNA, length (in bp) of DNA determined by DNA sequencing; CE, length (in bp) of DNA determined by CE; —, no amplification product was observed, even when different PCR primers and conditions were tried.
Based on sequencing data, a repeat unit was absent.