TABLE 4.
MLVA type | No. of repeats |
No. of isolates | Isolate IDa | MLST sequence type(s) | ||||||
---|---|---|---|---|---|---|---|---|---|---|
V2 | V6 | V11 | V13 | V17 | V19 | V33 | ||||
1 | 3 | 2 | 1 | 2 | 3.4 | 2.8 | 2 | 4 | 2, 9, 17, 18 | 4700 |
2 | 3 | 2 | 2 | 2 | 3.4 | 0b | 2 | 2 | 31, 33 | 31 |
3 | 3 | 2 | 2 | 2 | 3.4 | 2 | 2 | 1 | 39 | 354 |
4 | 3 | 2 | 2 | 2 | 3.4 | 2.8 | 2 | 1 | 12 | 4358 |
5 | 3 | 2 | 2 | 3.6 | 3.4 | 2.8 | 2 | 1 | 4 | 624 |
6 | 3 | 2 | 2 | 3.6 | 4 | 1 | 2 | 1 | 35 | 4363 |
7 | 3 | 2 | 2 | 4.8 | 3.4 | 2.8 | 2 | 1 | 11 | 627 |
8 | 5 | 2 | 1 | 2 | 3.4 | 0b | 2 | 2 | (7), (8) | 917, 1461 |
9 | 5 | 2 | 1 | 2 | 3.4 | 1 | 2 | 1 | 3 | 2439 |
10 | 5 | 2 | 1 | 3.6 | 3.4 | 0b | 2 | 1 | 23 | 6720 |
11 | 5 | 2 | 1 | 3.6 | 3.4 | 1 | 2 | 4 | 41, 42, 45, 50 | 574 |
12 | 5 | 2 | 1 | 2 | 3.4 | 2 | 2 | 1 | 26 | 6720 |
13 | 5 | 2 | 1 | 3.6 | 3.4 | 2 | 2 | 2 | (6), (25) | 3765, 6720 |
14 | 5 | 2 | 1 | 3.6 | 3.4 | 2.8 | 2 | 1 | 22 | 6720 |
15 | 5 | 2 | 1 | 3.6 | 4 | 1 | 2 | 2 | (5), (47) | 1993, 574 |
16 | 5 | 2 | 1 | 3.6 | 4 | 2 | 2 | 1 | 1 | 1514 |
17 | 5 | 2 | 1 | 3.6 | 4 | 2.8 | 2 | 1 | 37 | 5722 |
18 | 5 | 2 | 1 | 7 | 3.4 | 1 | 2 | 1 | 10 | 1993 |
19 | 5 | 2 | 2 | 2 | 3.4 | 0b | 2 | 1 | 24 | 773 |
20 | 5 | 2 | 2 | 2 | 3.4 | 2.8 | 2 | 1 | 27 | 347 |
21 | 5 | 2 | 2 | 3.6 | 3.4 | 0b | 2 | 3 | (28, 29), (36) | 268, 536 |
22 | 5 | 2 | 2 | 3.6 | 3.4 | 2 | 2 | 2 | 32, 34 | 31 |
23 | 5 | 2 | 2 | 3.6 | 4 | 0b | 2 | 1 | 30 | 268 |
24 | 5 | 2 | 2 | 4.8 | 3.4 | 0b | 2 | 2 | 13, 14 | 187 |
25 | 5 | 3 | 1 | 3.6 | 4 | 1 | 2 | 1 | 44 | 574 |
26 | 6.5 | 2 | 1 | 3.6 | 3.4 | 1 | 2 | 1 | 15 | 1993 |
27 | 6.5 | 2 | 1 | 3.6 | 3.4 | 2.8 | 2 | 1 | 16 | 2433 |
28 | 6.5 | 2 | 1 | 4.8 | 3.4 | 2.8 | 2 | 6 | 19, 20, 40, 43, 48, 49 | 45 |
29 | 6.5 | 2 | 2 | 4.8 | 3.4 | 2.8 | 2 | 1 | 21 | 2751 |
30 | 6.5 | 3 | 1 | 4.8 | 3.4 | 1 | 2 | 1 | 38 | 583 |
31 | 6.5 | 3 | 1 | 4.8 | 3.4 | 2.8 | 2 | 1 | 46 | 45 |
The isolate identifiers (ID) in different sets of parentheses are of different MLST sequence types [correlating to the different numbers in the "MLST sequence type(s)" column].
Based on sequencing data, a repeat unit was absent.