Table 3. Number, abundance and density of mono- to hexanucleotide repeat type in the bovid genomes.
Repeat type | B. taurus | B. mutus | Bu. bubalis | O. aries | C. hircus | P. hodgsonii | |
---|---|---|---|---|---|---|---|
Mono- | # SSRs | 365,798 | 316,378 | 333,806 | 303,318 | 297,036 | 285,233 |
Abundance (#/Mb) | 122.61 | 119.61 | 117.7 | 117.22 | 112.69 | 105.76 | |
Density (bp/Mb) | 1829.58 | 1759.18 | 1767.92 | 1750.45 | 1677.22 | 1537.07 | |
Di- | # SSRs | 187,846 | 171,526 | 187,499 | 167,117 | 164,986 | 163,312 |
Abundance (#/Mb) | 62.97 | 64.85 | 66.11 | 64.59 | 62.59 | 60.56 | |
Density (bp/Mb) | 1380.85 | 1324.79 | 1364.80 | 1436.86 | 1350.32 | 1326.49 | |
Tri- | # SSRs | 123,674 | 112,936 | 121,982 | 91,709 | 92,073 | 90,696 |
Abundance (#/Mb) | 41.46 | 42.70 | 43.01 | 35.44 | 34.93 | 33.63 | |
Density (bp/Mb) | 719.46 | 744.70 | 737.23 | 653.50 | 626.53 | 617.95 | |
Tetra- | #SSRs | 51,615 | 46,006 | 52,793 | 49,851 | 49,943 | 52,900 |
Abundance (#/Mb) | 17.30 | 17.39 | 18.61 | 19.27 | 18.95 | 19.62 | |
Density (bp/Mb) | 298.90 | 301.74 | 325.73 | 353.53 | 341.88 | 361.72 | |
Penta- | # SSRs | 76,182 | 68,428 | 76,442 | 69,111 | 71,036 | 69,509 |
Abundance (#/Mb) | 25.54 | 25.87 | 26.95 | 26.71 | 26.95 | 25.77 | |
Density (bp/Mb) | 537.95 | 554.38 | 566.31 | 582.83 | 587.20 | 568.36 | |
Hexa- | # SSRs | 1,792 | 1,086 | 1,787 | 1,785 | 1,943 | 1,429 |
Abundance (#/Mb) | 0.60 | 0.41 | 0.63 | 0.69 | 0.74 | 0.53 | |
Density (bp/Mb) | 16.63 | 12.01 | 17.74 | 19.95 | 20.48 | 14.88 |