Skip to main content
. 2010 Oct 28;3:29–56. doi: 10.4137/GEI.S4340

Table S1.

ESTs that tag for enzymatic functions putatively involved in the metabolism of saturated fatty acid of J. curcas.

Pathway EST Reads/contig KEGG homolog Definition EC Map Sz1 Homol2 Id%3
Fatty acid biosynthesis (00061)
*Contig376 FM891097, FM892258, FM891175, FM893271, FM892235, FM893697 rcu:RCOM_1431360 Short chain dehydrogenase 1.1.1.100 1040, 61 293 181 88
Contig397 FM893767, FM891233 rcu:RCOM_0925410 Palmitoyl-acyl carrier protein thioesterase 3.1.2.14 61 419 106 90
*Contig895 FM896100, FM888313, FM889937 rcu:RCOM_0251360 Ketoacyl-ACP Synthase III 2.3.1.41 61 400 158 91
Contig1093 GH295922, FM888387, GH296315 rcu:RCOM_0633300 Ketoavyl-ACP synthase 2.3.1.41 61 469 78 78
FM887191 rcu:RCOM_0633300 50 kDa ketoavyl-ACP synthase 2.3.1.41 61 469 97 73
FM887714 rcu:RCOM_1403260 Malonyl-CoA : ACP acyltransferase 2.3.1.39 61 400 124 75
FM888027 rcu:RCOM_0710230 46 kDa ketoavyl-ACP synthase 2.3.1.41 61 554 52 98
FM889551 rcu:RCOM_1636080 2,4-dienoyl-CoA reductase 1.1.1.100 1040, 61 285 109 88
FM891538 rcu:RCOM_1431360 Short chain dehydrogenase 1.1.1.100 1040, 61 293 56 80
FM895510 rcu:RCOM_0097860 Enoyl-ACP reductase precursor 1.3.1.9 61 359 121 76
FM895824 pop:POPTR_555276 Enoyl-[acyl-carrier protein reductase 1.3.1.9 61 394 162 82
GO247153 olu:OSTLU_12103 3-oxoacyl-[acyl-carrier protein reductase 1.1.1.100 1040, 61 273 44 77
GT228627 rcu:RCOM_1081890 Ketoacyl-ACP Reductase 1.1.1.100 1040, 61 328 188 75
Fatty acid elongation in mitochondria (00062)
Contig332 FM890615, FM896803, FM892730 ath:AT3G06860 Multifunctional protein MFP2 1.1.1.211 1070, 71, 1040, 62 725 258 84
FM892914 ec00062 3-ketoacyl-CoA thiolase B 2.3.1.16 1070, 71, 592, 1040, 62 460 88 90
GT229218 rcu:RCOM_0696050 Enoyl-CoA hydratase, mitochondrial precursor 4.2.1.17 1070, 71, 592, 1040, 62 389 195 78
Fatty acid metabolism (00071)
Contig332 FM890615, FM896803, FM892730 ath:AT3G06860 Multifunctional protein MFP2 1.1.1.211 1070, 71, 1040, 62 725 258 84
*Contig433 FM891676, FM891199 rcu:RCOM_0914000 Acyl-CoA synthetase 6.2.1.3 71 694 74 78
*Contig516 FM892437, FM890803, FM892732, GO247603, FM893815, FM891552 npu:Npun_F3727 Ferredoxin 2Fe-2S 1.18.1.3 71 99 96 68
Contig1015 GH295632, GH295820, GH296400, GH296214, GH295687, GH296081, GH296508, GH296024, GH295630,GH295630, GH296026, GH295757, GH296151 pmj:P9211_14071 Ferredoxin 1.18.1.3 71 99 98 61
*Contig1435 GT229265, GO247630, FM894566, FM890476, GO247018, FM889828 dre:436918 Dodecenoyl-CoA delta-isomerase 5.3.3.8 71 357 68 47
FM888666 rcu:RCOM_1032290 Long-chain-fatty-acid CoA ligase 6.2.1.3 71 697 127 83
FM892914 rcu:RCOM_1020840 3-ketoacyl-CoA thiolase B 2.3.1.16 1070, 71, 592, 1040, 62 460 88 90
FM894424 rcu:RCOM_1437260 Cytochrome P450 1.14.14.1 1063 632 180 86
FM894637 vvi:100257352 Glutaryl-CoA dehydrogenase 1.3.99.7 71 446 155 89
FM894979 pop:POPTR_832274 Acyl-CoA oxidase 1.3.3.6 1070, 71, 592, 1040 689 196 92
GO247595 dre:436918 Dodecenoyl-CoA delta-isomerase 5.3.3.8 71 357 68 47
GT229218 rcu:RCOM_0696050 Enoyl-CoA hydratase, mitochondrial precursor 4.2.1.17 1070, 71, 592, 1040, 62 389 195 78

Notes:

1

Sz is for the size of the KEGG homologous protein in amino acids;

2

Homol is for the size of the homologous region in amino acids;

3

Id% is for the pourcentage of identity of amino acid homologous pairs;

*

A contig with an asterisk in front means that its reads show nucleotide polymorphism.