Table S4.
ESTs that tag for enzymatic functions putatively involved in terpene biosynthesis in J. curcas.
| Pathway | EST | Reads/contig | KEGG homolog | Definition | EC | Map | Sz1 | Homol2 | Id%3 |
|---|---|---|---|---|---|---|---|---|---|
| Terpenoid backbone biosynthesis (00900) | |||||||||
| *Contig1203 | GO247043, GH295921, FM896506, GH296298, GH295905, GH296485, GH296314, GH296501 | swo:Swol_1344 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein | 1.17.1.2 | 1070, 1062, 1066, 900 | 687 | 54 | 51 | |
| FM888319 | pop: POPTR_418371 | 1-deoxy-D-xylulose-5-phosphate synthase | 2.2.1.7 | 1070, 1062, 1066, 900 | 657 | 64 | 93 | ||
| FM889171 | pop: POPTR_646543 | Hydroxymethylglutaryl-CoA synthase | 2.3.3.10 | 1070, 1062, 1066, 900 | 464 | 112 | 92 | ||
| FM894459 | rcu:RCOM_1431350 | Mevalonate kinase | 2.7.1.36 | 1070, 1062, 1066, 900 | 386 | 60 | 83 | ||
| GO246785 | rcu:RCOM_0679170 | 1-deoxyxylulose-5-phosphate synthase | 2.2.1.7 | 1070, 1062, 1066, 900 | 720 | 81 | 90 | ||
| GT229261 | rcu: RCOM_0747390 | Geranylgeranyl pyrophosphate synthase | 2.5.1.30 | 900 | 417 | 102 | 83 | ||
| Monoterpenoid biosynthesis (00902) | |||||||||
| FM887640 | rcu:RCOM_1544790 | R-limonene synthase | 4.2.3.20 | 1062, 902 | 596 | 45 | 80 | ||
| FM888507 | rcu: RCOM_1732250 | R-limonene synthase | 4.2.3.20 | 1062, 902 | 250 | 54 | 44 | ||
| FM888632 | rcu: RCOM_1593840 | Cytochrome P450 | 1.3.3.9 | 1062, 1066, 902 | 613 | 64 | 65 | ||
| FM889984 | rcu: RCOM_1544790 | R-limonene synthase | 4.2.3.20 | 1062, 902 | 596 | 72 | 75 | ||
| Diterpenoid biosynthesis (00904) | |||||||||
| FM887587 | rcu: RCOM_1013800 | 3′-N-debenzoyl-2′-deoxytaxol N-benzoyltransferase | 2.3.1.167 | 1062, 904 | 446 | 86 | 89 | ||
| FM889243 | rcu: RCOM_1607300 | Cytochrome P450 | 1.14.13.79 | 1070, 1062, 904 | 298 | 44 | 84 | ||
| FM891970 | rcu: RCOM_1574750 | Casbene synthase, chloroplast precursor | 4.2.3.8 | 1062, 904 | 555 | 138 | 69 | ||
| FM896109 | ath:AT3G48360 | BT2; BT2 (BTB and TAZ domain protein 2; protein binding/transcription factor/transcription regulator) | 1.14.-.- | 1070, 1062, 100, 904, 130, 905 | 364 | 87 | 50 | ||
| Sesquiterpenoid biosynthesis (00909) | |||||||||
| FM889102 | rcu:RCOM_1045160 | Delta-cadinene synthase isozyme A | 4.2.3.13 | 1062, 909 | 547 | 112 | 59 | ||
Notes:
1
Sz is for the size of the KEGG homologous protein in amino acids.
2
Homol is for the size of the homologous region in amino acids.
3
Id% is for the pourcentage of identity of amino acid homologous pairs;
*
A contig with an asterisk in front means that its reads show nucleotide polymorphism.