Table 15.

Pathway Curation task primary evaluation results by event type.

Event	NaCTeM			TEES-2.1
	recall	prec.	F-score	recall	prec.	F-score
CONVERSION	34.33	35.48	34.90	35.82	42.86	39.02
PHOSPHORYLATION	62.46	55.94	59.02	53.40	66.00	59.03
DEPHOSPHORYLATION	45.00	56.25	50.00	35.00	77.78	48.28
ACETYLATION	69.57	72.73	71.11	82.61	76.00	79.17
DEACETYLATION	33.33	33.33	33.33	0.00	0.00	0.00
METHYLATION	42.86	60.00	50.00	57.14	80.00	66.67
DEMETHYLATION	100.00	100.00	100.00	100.00	100.00	100.00
UBIQUITINATION	52.94	64.29	58.06	58.82	76.92	66.67
DEUBIQUITINATION	100.00	100.00	100.00	100.00	100.00	100.00
LOCALIZATION	42.25	61.22	50.00	43.66	54.39	48.44
TRANSPORT	65.52	61.29	63.33	56.55	59.85	58.16
GENE EXPRESSION	90.65	83.15	86.74	84.55	79.39	81.89
TRANSCRIPTION	71.15	82.22	76.29	57.69	73.17	64.52
TRANSLATION	0.00	0.00	0.00	50.00	100.00	66.67
Simple-total	66.42	64.80	65.60	60.40	67.87	63.92
DEGRADATION	78.57	89.19	83.54	78.57	78.57	78.57
ACTIVATION	78.54	70.96	74.56	72.06	72.06	72.06
INACTIVATION	44.62	55.77	49.57	38.46	45.45	41.67
BINDING	64.96	47.30	54.74	53.96	53.96	53.96
DISSOCIATION	38.46	46.88	42.25	35.90	45.16	40.00
PATHWAY	84.91	75.50	79.93	70.94	75.50	73.15
General-total	69.07	62.69	65.72	61.16	65.74	63.37
REGULATION	33.33	33.97	33.65	29.73	39.51	33.93
POSITIVE REGULATION	35.49	42.81	38.81	34.51	45.45	39.23
NEGATIVE REGULATION	45.75	50.64	48.07	41.02	47.37	43.97
Regulation-total	37.73	42.79	40.10	35.17	44.76	39.39
Sub-total	53.47	53.96	53.72	48.23	56.22	51.92
NEGATION	24.52	35.87	29.13	25.16	41.30	31.27
SPECULATION	15.79	22.22	18.46	0.00	0.00	0.00
Modification-total	23.56	34.65	28.05	22.41	40.00	28.73
Total	52.23	53.48	52.84	47.15	55.78	51.10