Table 8.
Results of KB evaluation for Q5 (Find the protein pairs of which one regulates the other) and Q6 (Find the protein pairs of which one regulates the other, transitive).
| Q5 (Regulation) | Q6 (transitive Regulation) | |||||
|---|---|---|---|---|---|---|
| P | TP | R / P / F | P | TP | R / P / F | |
| GS | 108 | 108 | - | 360 | 360 | - |
| EVEX | 61 | 18 | 16.67 / 29.51 / 21.30 | 197 | 126 | 35.00 / 63.96 / 45.24 |
| TEES-2.1 | 65 | 18 | 16.67 / 27.69 / 20.81 | 218 | 133 | 36.94 / 61.01 / 46.02 |
| BioSEM | 45 | 14 | 12.96 / 31.11 / 18.30 | 155 | 90 | 25.00 / 58.06 / 34.95 |
| NCBI | 34 | 8 | 07.41 / 23.53 / 11.27 | 103 | 69 | 19.17 / 66.99 / 29.81 |
| DlutNLP | 69 | 20 | 18.52 / 28.99 / 22.60 | 174 | 106 | 29.44 / 60.92 / 39.70 |
| HDS4NLP | 31 | 13 | 12.04 / 41.94 / 18.71 | 31 | 17 | 04.72 / 54.84 / 08.70 |
| NICTANLM | 31 | 5 | 04.63 / 16.13 / 07.19 | 112 | 64 | 17.78 / 57.14 / 27.12 |
| USheff | 18 | 5 | 04.63 / 27.78 / 07.94 | 60 | 35 | 09.72 / 58.33 / 16.67 |
| UZH | 6 | 0 | 00.00 / 00.00 / 00.00 | 21 | 8 | 02.22 / 38.10 / 04.20 |
| HCMUS | 94 | 9 | 08.33 / 09.57 / 08.91 | 156 | 33 | 09.17 / 21.15 / 12.79 |
Acronyms: GS=gold standard, P=positives, TP=true positives, R=recall, P=precision, F=f-score.