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. 2015 Jun 10;290(30):18584–18595. doi: 10.1074/jbc.M114.600742

TABLE 2.

Oligonucleotides

Primer Sequence Use
ACT1 5′-CTATTGGTAACGAAAGATTCAG-3′ qRT-PCR
5′-CCTTACGGACATCGACATCA-3′
CTH2 5′-AGGTATGCTGCTGGAGCTGT-3′ qRT-PCR
5′-GAGGGCCATGAAGGTATCAA-3′
FET4 5′-GGAGAACTGCCTGTGGAAAA-3′ qRT-PCR
5′-TTCTCCGGTGTAAGGTGGAG-3′
FET3 5′-ACGGTGTGAATTACGCCTTC-3′ qRT-PCR
5′-TTGGAAAGCGTGACCATGTA-3′
ROX1 5′-AGGGCTTACAACCGGAAGAT-3′ qRT-PCR
5′-GCTGTTGCTCGATTTCCTTC-3′
CUP1 5′-TGAAGGTCATGAGTGCCAAT-3′ qRT-PCR
5′-GCATTTGTCGTCGCTGTTAC-3′
ARN2 5′-AGGTATGCTGCTGGAGCTGT-3′ qRT-PCR
5′-GAGGGCCATGAAGGTATCAA-3′
ACT1-ChIP 5′-GATCCTTTCCTTCCCAATCTCTCTTG-3′ ChIP
5′-GCTCATGTAGTAGAAGATCCTATT-3′
ARN2 5′-GGTATGCTGCTGGAGCTGT-3′ ChIP
5′-AGGGCCATGAAGGTATCAA-3′
ROX1-414bp 5′-GCAAAACAATTGGAAATCTGG-3′ ChIP
5′-GAACAACAAAAGAGGCAGCA-3′
ROX1-897bp 5′-TCTACATAATGCACGAAACTTGG-3′ ChIP
5′-CGCAGTGTGTGTTCCTGTCT-3′
ROX1p'1000 5′-CTAGCATGCAGTTGACCTACATTCAAC-3′ pROX1
A4-ROX1 5′-GGATTTCGCATCCTAGACCA-3′
ROX1m Fw 5′-TGGCGATTGAAGACAAAGAAGAAA-3′ MUT-pROX1
ROX1m Rv 5′-TTTCTTCTTTGTCTTCAATCGCCA-3′
ROX1-ATG-codon 5′-CTAGCATGCAGTTGACCTACATTCAAC-3′ pROX1-lacZ
5′-CTTGGATCCGGATTCATTGTTGATTGTC-3′
FET4-ORF 5′-GAATTCCTGCAGCCCCTGTGCTTGCTGTTC-3′ pFET4-HA
5′-ATGTACCCATACGATGTTCCAGATTACGCTTAGCTTCATTGAACA-3′
0.5Kb-FET4-terminator 5′-AGCGTAATCTGGAACATCGTATGGGTACATTTTTTCCAACATCAT-3′ pFET4-HA
5′-ACTAGTGGATCCCCCGACATATAAGCGGAG-3′
FET4m1 Fw 5′-GCCTTCTTAATTGAGTTTAGCATC-3′ MUT-pFET4-HA (Aft1 site 1 deletion)
FET4m1 Rv 5′-GATGCTAAACTCAATTAAGAAGGC-3′
FET4m2 Fw 5′-GTTCCGAAAACCCACTTTTTGTTC-3 MUT-pFET4-HA (Aft1 site 2 deletion)
FET4m2 Rv 5′-GAACAAAAAGTGGGTTTTCGGAAC-3′