Table 3. Chromosome-wise LD estimates in 93 wild and cultivated Cicer accessions using kabuli reference genome-based GBS-SNP.
| Chromosomes | Number of marker-pairs used | aNumber of significant marker-pairs in LD | bSignificant LD (%) | Extent of LD (r2) |
|---|---|---|---|---|
| Ca-kabuli-Chr01 | 1165945 | 52455 | 4.5 | 0.67 |
| Ca-kabuli-Chr02 | 624404 | 37643 | 6.0 | 0.40 |
| Ca-kabuli-Chr03 | 836571 | 23832 | 2.8 | 0.42 |
| Ca-kabuli-Chr04 | 1516603 | 155216 | 10.2 | 0.39 |
| Ca-kabuli-Chr05 | 758296 | 7816 | 1.0 | 0.51 |
| Ca-kabuli-Chr06 | 1148703 | 39687 | 3.5 | 0.58 |
| Ca-kabuli-Chr07 | 1053625 | 33542 | 3.2 | 0.38 |
| Ca-kabuli-Chr08 | 1053625 | 5822 | 4.0 | 0.46 |
| Total chromosomes | 1019720 | 44500 | 4.4 | 0.48 |
aPercentage of SNP marker locus-pairs in significant (P < 0.001) LD.
bSignificant threshold (P < 0.001) at which pair-wise LD estimates is significant statistically.