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. 2015 Mar 26;43(13):e84. doi: 10.1093/nar/gkv257

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© The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Figure 4. — Comparison of TE annotations obtained by TASR with RepeatScout and REPET. (A) Venn diagrams showing the common and specific TE fractions in Mbp obtained using TASR and RepeatScout/REPET. Blue is TASR-specific TEs, green common TEs and yellow RepeatScout/REPET-specific TEs. (B) Relative frequency distribution of library length in kbp generated by RepeatScout, REPET and TASR. Note the relative frequency was limited in Y-axis to facilitate comparisons. (C) Comparison of the percentage of TEs targeted by 24 nt-siRNAs between TASR, REPET and RepeatScout. (D) Genome Browser screenshot showing representative example of TE annotation obtained by TASR, REPET and RepeatScout.