Table 1.
Total run-time and speed up of pairwise alignments due to sparsification across Bralibase 2.1 set k2
| Tool | Total time (s) | Mean time (s) | Speedup (versus LocARNA) |
|---|---|---|---|
| LocARNA | 13400 | 1.49 | 1.0 |
| SPARSE | 3600 | 0.40 | 3.7 |
| RAF | 3200 | 0.36 | 4.2 |
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