Table 4.
Over-represented families of paralogous genes based on the wFleaBase annotations. In total 3,978 families encompassed 24,102 genes (genes per family: median — 3, 5–95 % interval — 2–18)
| Regulation | Family | Function | Numbera | GSNAP | TopHat |
|---|---|---|---|---|---|
| UP | Omcl36 | Pupal cuticle protein | 59 | 11 | 9 |
| UP | Omcl49 | Pupal cuticle protein | 47 | 6 | 7 |
| UP | Omcl195 | Zinc-metalloproteinase | 19 | 9 | 8 |
| UP | Omcl240 | Globin | 15 | 4 | 5 |
| UP | Omcl335 | Vitellogenin/Superoxide dismutase | 12 | 6 | 6 |
| UP | Omcl886 | Cuticle protein | 5 | 3 | ns |
| UP | Omcl2139 | Unknown | 2 | 2 | 2 |
| UP | Omcl3428 | Cyclin a | 2 | 2 | ns |
| UP | Omcl3680 | Unknown | 2 | 2 | 2 |
| DN | Omcl23 | Neurexin/Complement C1q | 82 | 5 | 5 |
| DN | Omcl277 | Elongation of very long chain fatty acids protein | 15 | 3 | 4 |
| DN | Omcl329 | C-type lectin | 12 | 6 | 5 |
| DN | Omcl1532 | Unknown | 3 | 2 | 3 |
| DN | Omcl1713 | Unknown | 3 | 2 | ns |
| DN | Omcl1963 | Unknown | 3 | 3 | 3 |
| DN | Omcl2758 | Unknown | 2 | 2 | 2 |
| DN | Omcl3591 | Unknown | 2 | 2 | 2 |
ns — group not significantly over-represented
aTotal number of genes in the respective family