Table 2.
Top 10 differentially expressed KEGG genes between powdery mildew susceptible (“Carolina Beauty,” CAB) and powdery mildew resistant (“Natchez,” NAT) crape myrtle genotypes.
| KEGG ID | KEGG pathway ID | Pathway | Definition | Fold change | P value | ||
|---|---|---|---|---|---|---|---|
| EdgeR | DESeq | Rankprod | |||||
| K13230 | ko00402 | Benzoxazinoid biosynthesis | 2,4,7-Trihydroxy-1,4-benzoxazin-3-one-glucoside 7-O-methyltransferase [EC:2.1.1.241] | 67.7 | 0.00E + 00 | 6.89E − 30 | 0 |
| K05280 | ko00941 | Flavonoid biosynthesis | Flavonoid 3′-monooxygenase [EC:1.14.13.21] | 3.49 | 4.80E − 76 | 1.03E − 07 | 0.00068 |
| K00660 | ko00941 | Flavonoid biosynthesis | Chalcone synthase [EC:2.3.1.74] | 2.28 | 3.83E − 44 | 5.79E − 08 | 0.00472 |
| K00517 | 1.7 | 3.33E − 19 | 0.000124 | 0.0288 | |||
| K00487 | ko00941 | Flavonoid biosynthesis | trans-Cinnamate 4-monooxygenase [EC:1.14.13.11] | 3.31 | 2.04E − 68 | 5.20E − 07 | 0.000766 |
| K11251 | ko05034 | Alcoholism | Histone H2A | 1.59 | 6.31E − 22 | 6.94E − 21 | 0.041 |
| K11254 | ko05035 | Alcoholism | Histone H4 | 1.57 | 5.60E − 21 | 6.81E − 20 | 0.0464 |
| K08081 | ko00960 | Tropane, piperidine, and pyridine alkaloid biosynthesis | Tropine dehydrogenase [EC:1.1.1.206] | 7.37 | 0.00E + 00 | 4.63E − 251 | 8.10E − 05 |
| K00549 | ko00270 | Cysteine and methionine metabolism | 5-Methyltetrahydropteroyltriglutamate–homocysteine methyltransferase [EC:2.1.1.14] | 1.65 | 1.74E − 17 | 0.000147 | 0.0351 |
| K10775 | ko00360 | Phenylalanine metabolism | Phenylalanine ammonia-lyase [EC:4.3.1.24] | 1.99 | 1.18E − 19 | 0.00886 | 0.0133 |
| K00276 | ko00260; ko00350; ko00360; ko00410; ko00950; ko00960 | Primary-amine oxidase [EC:1.4.3.21] | 3.91 | 2.47E − 86 | 4.64E − 08 | 0.000429 | |
| K01583 | ko00330 | Arginine and proline metabolism | Arginine decarboxylase [EC:4.1.1.19] | 8.82 | 1.12E − 181 | 3.34E − 12 | 5.52E − 05 |
| K01904 | ko00130; ko00360; ko00940 | 4-Coumarate–CoA ligase [EC:6.2.1.12] | 2.04 | 3.35E − 31 | 1.23E − 05 | 0.00942 | |
| K03327 | Multidrug resistance protein, MATE family | 1.56 | 1.79E − 17 | 1.39E − 09 | 0.0493 | ||
| K01890 | ko00970 | Aminoacyl-tRNA biosynthesis | Phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] | 2.83 | 7.19E − 95 | 1.01E − 38 | 1.56E − 03 |
| K06568 | 1.66 | 1.27E − 23 | 1.10E − 11 | 0.0319 | |||
| K05279 | ko00944 | Flavonol 3-O-methyltransferase | Flavonol 3-O-methyltransferase [EC:2.1.1.76] | 2.33 | 1.59E − 68 | 9.41E − 58 | 0.00373 |